RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 TRAF4Q9BUZ4 470 aaPredicted RBP13□□□□□ -0.33
VPS28-215ENST00000531924 MTHFD2LQ9H903 347 aaPredicted RBP13□□□□□ -0.33
VPS28-215ENST00000531924 CACYBPQ9HB71 228 aaKnown RBP13□□□□□ -0.33
VPS28-215ENST00000531924 TAS2R16Q9NYV7 291 aa13□□□□□ -0.33
VPS28-215ENST00000531924 TRAPPC4Q9Y296 219 aa13□□□□□ -0.33
VPS28-215ENST00000531924 ZANQ9Y493 2812 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 TLN2Q9Y4G6 2542 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 CFAP73A6NFT4 308 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 AGAP5A6NIR3 686 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 TRPC5OSA6NMA1 111 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 ZNF716A6NP11 495 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 M0R1B8 84 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 AP3D1O14617 1153 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 KRT75O95678 551 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 IGHV4-39P01824 125 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 GSNP06396 782 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 PGRP06401 933 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 DBIP07108 87 aaKnown RBP12.99□□□□□ -0.33
VPS28-215ENST00000531924 PTAFRP25105 342 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 TACR3P29371 465 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 MAP2K6P52564 334 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 SLC16A1P53985 500 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 TGFBR3Q03167 851 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 BST1Q10588 318 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 FUT5Q11128 374 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 NRF1Q16656 503 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 NXNQ6DKJ4 435 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 OGFOD2Q6N063 350 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 SEZ6L2Q6UXD5 910 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 LRRC74BQ6ZQY2 392 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 PEX5LQ8IYB4 626 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 FBXL14Q8N1E6 418 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 PNPT1Q8TCS8 783 aaKnown RBP12.99□□□□□ -0.33
VPS28-215ENST00000531924 RHNO1Q9BSD3 238 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 PARD6BQ9BYG5 372 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 HAO1Q9UJM8 370 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 SLC9A8Q9Y2E8 581 aa12.99□□□□□ -0.33
VPS28-215ENST00000531924 NUP214P35658 2090 aaPredicted RBP12.98□□□□□ -0.33
VPS28-215ENST00000531924 CSPG4Q6UVK1 2322 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 A0A1W2PR80 420 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 KIAA1324LA8MWY0 1029 aaPredicted RBP12.98□□□□□ -0.33
VPS28-215ENST00000531924 SHISA9B4DS77 424 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 RFXANKO14593 260 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 ZNF208O43345 1280 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 SSX4O60224 188 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 ADAM11O75078 769 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 ANP32DO95626 131 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 BMP4P12644 408 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 PTNP21246 168 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 CXCR1P25024 350 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 SLC1A3P43003 542 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 FABP6P51161 128 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 NUDT6P53370 316 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 COPZ1P61923 177 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 AP1ARQ63HQ0 302 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 KLHL24Q6TFL4 600 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 ZNF440Q8IYI8 595 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 INPP5KQ9BT40 448 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 C1QTNF6Q9BXI9 259 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 GRIP2Q9C0E4 1043 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 SLC38A1Q9H2H9 487 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 AIG1Q9NVV5 245 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 NPAP1Q9NZP6 1156 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 MALT1Q9UDY8 824 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 OSGIN1Q9UJX0 560 aa12.98□□□□□ -0.33
VPS28-215ENST00000531924 GDF2Q9UK05 429 aaPredicted RBP12.98□□□□□ -0.33
VPS28-215ENST00000531924 GOLGA8QA0A0J9YX86 632 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 TMEM72A0PK05 275 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 PRAMEF27A3QJZ7 478 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 GOLGA8OA6NCC3 632 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 TMEM247A6NEH6 219 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 GOLGA8NF8WBI6 632 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 SDHDO14521 159 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 HDAC3O15379 428 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 CRLF1O75462 422 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 KRT33AO76009 404 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 CHRM4P08173 479 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 ALDOCP09972 364 aaKnown RBP12.97□□□□□ -0.33
VPS28-215ENST00000531924 KITP10721 976 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 CD40P25942 277 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 MPP2Q14168 576 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 GSTA3Q16772 222 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 MRPL2Q5T653 305 aaKnown RBP12.97□□□□□ -0.33
VPS28-215ENST00000531924 C9orf135Q5VTT2 229 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 DTX2Q86UW9 622 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 CADM2Q8N3J6 435 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 GLB1L3Q8NCI6 653 aaPredicted RBP12.97□□□□□ -0.33
VPS28-215ENST00000531924 MGARPQ8TDB4 240 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 TEX37Q96LM6 180 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 DHRS9Q9BPW9 319 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 CACNG6Q9BXT2 260 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 WDR55Q9H6Y2 383 aaPredicted RBP12.97□□□□□ -0.33
VPS28-215ENST00000531924 FKRPQ9H9S5 495 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 YAE1D1Q9NRH1 226 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 THAP1Q9NVV9 213 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 CALML5Q9NZT1 146 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 P2RX2Q9UBL9 471 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 B3GALT5Q9Y2C3 310 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 SLC25A15Q9Y619 301 aa12.97□□□□□ -0.33
VPS28-215ENST00000531924 ATP23Q9Y6H3 246 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms