RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ERMAPQ96PL5 475 aaPredicted RBP17.72■□□□□ 0.43
VPS28-213ENST00000530983 RPP25Q9BUL9 199 aaKnown RBP17.72■□□□□ 0.43
VPS28-213ENST00000530983 ZCCHC4Q9H5U6 513 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 CCDC86Q9H6F5 360 aaKnown RBP17.72■□□□□ 0.43
VPS28-213ENST00000530983 POLE3Q9NRF9 147 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 DNAJB12Q9NXW2 375 aaKnown RBP17.72■□□□□ 0.43
VPS28-213ENST00000530983 CHRNA9Q9UGM1 479 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 SERTAD3Q9UJW9 196 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 SPACA6W5XKT8 324 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 TEX13CA0A0J9YWL9 993 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 IFNGP01579 166 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 HIST1H1CP16403 213 aaKnown RBP17.72■□□□□ 0.43
VPS28-213ENST00000530983 GDI2P50395 445 aaKnown RBP17.72■□□□□ 0.43
VPS28-213ENST00000530983 RPS11P62280 158 aaKnown RBP eCLIP17.72■□□□□ 0.43
VPS28-213ENST00000530983 CRYZQ08257 329 aaKnown RBP17.72■□□□□ 0.43
VPS28-213ENST00000530983 ALG10BQ5I7T1 473 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 CA13Q8N1Q1 262 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 ZNF655Q8N720 491 aaPredicted RBP17.72■□□□□ 0.43
VPS28-213ENST00000530983 OR52R1Q8NGF1 315 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 OR51L1Q8NGJ5 315 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 OR4K13Q8NH42 304 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 FGF14Q92915 247 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 CERS4Q9HA82 394 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 EMC7Q9NPA0 242 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 BRD7Q9NPI1 651 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 ABRACLQ9P1F3 81 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 MRPS7Q9Y2R9 242 aaKnown RBP17.72■□□□□ 0.43
VPS28-213ENST00000530983 COL4A2P08572 1712 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 TEX51A0A1B0GUA7 166 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 A0A1W2PQF6 199 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 LINC00862A6NCI5 91 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 SLC22A5O76082 557 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 RASGRP1O95267 797 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 SERPINA3P01011 423 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 CXCL3P19876 107 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 NTSR1P30989 418 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 RBM34P42696 430 aaKnown RBP17.71■□□□□ 0.43
VPS28-213ENST00000530983 PER3P56645 1201 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 PARM1Q6UWI2 310 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 TIGD4Q8IY51 512 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 HOXB13Q92826 284 aaPredicted RBP17.71■□□□□ 0.43
VPS28-213ENST00000530983 ANKRD9Q96BM1 317 aaPredicted RBP17.71■□□□□ 0.43
VPS28-213ENST00000530983 BMFQ96LC9 184 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 OR51J1Q9H342 316 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 ZNF222Q9UK12 451 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 ELF5Q9UKW6 265 aaPredicted RBP17.71■□□□□ 0.43
VPS28-213ENST00000530983 FLRT2O43155 660 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 GALR3O60755 368 aaPredicted RBP17.71■□□□□ 0.43
VPS28-213ENST00000530983 TNFRSF4P43489 277 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 PSG6Q00889 435 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 ANGPT1Q15389 498 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 GRAMD2AQ8IUY3 354 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 OR51Q1Q8NH59 317 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 RSC1A1Q92681 617 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 GPR137Q96N19 417 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 MYADMQ96S97 322 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 GABRG3Q99928 467 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 TMEM106CQ9BVX2 250 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 GSDMCQ9BYG8 508 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 CD93Q9NPY3 652 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 MRPL39Q9NYK5 338 aaKnown RBP17.71■□□□□ 0.43
VPS28-213ENST00000530983 ICAM5Q9UMF0 924 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 ING4Q9UNL4 249 aa17.71■□□□□ 0.43
VPS28-213ENST00000530983 TICRRQ7Z2Z1 1910 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 OR5K3A6NET4 321 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 IGKV1D-16P01601 117 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 PDGFAP04085 211 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 UCHL1P09936 223 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 ANKRD34CP0C6C1 535 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 SDHBP21912 280 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 NAA10P41227 235 aaPredicted RBP17.7■□□□□ 0.42
VPS28-213ENST00000530983 CCR6P51684 374 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 CD276Q5ZPR3 534 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 FAM109BQ6ICB4 259 aaPredicted RBP17.7■□□□□ 0.42
VPS28-213ENST00000530983 LINC00114Q6XXX2 140 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 ZNF782Q6ZMW2 699 aaPredicted RBP17.7■□□□□ 0.42
VPS28-213ENST00000530983 SYS1Q8N2H4 156 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 FAM98AQ8NCA5 519 aaKnown RBP17.7■□□□□ 0.42
VPS28-213ENST00000530983 OR4N2Q8NGD1 307 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 BAHD1Q8TBE0 780 aaPredicted RBP17.7■□□□□ 0.42
VPS28-213ENST00000530983 LRRC20Q8TCA0 184 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 OR2M2Q96R28 347 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 OR14A2Q96R54 314 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 CNN2Q99439 309 aaKnown RBP17.7■□□□□ 0.42
VPS28-213ENST00000530983 ORAI3Q9BRQ5 295 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 CACNG6Q9BXT2 260 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 NUP50Q9UKX7 468 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 MGAT4AQ9UM21 535 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 SZT2Q5T011 3432 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 F5P12259 2224 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 ARL6IP5O75915 188 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 OR2T7P0C7T2 308 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 ACTA2P62736 377 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 ACTG2P63267 376 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 SIRPAP78324 504 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 PITPNAQ00169 270 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 FAM53BQ14153 422 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 GGTLC2Q14390 218 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 SLC51BQ86UW2 128 aa17.7■□□□□ 0.42
VPS28-213ENST00000530983 OR11H4Q8NGC9 324 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms