RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 FMO3P31513 532 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 CXCR4P61073 352 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 TEKQ02763 1124 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 FOXF1Q12946 379 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 TUBA3CQ13748 450 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 BLMHQ13867 455 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 ZNF74Q16587 644 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 AGAP7PQ5VUJ5 663 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 TUBA3EQ6PEY2 450 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 C5orf46Q6UWT4 87 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 LINC00696Q6ZRV3 163 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 SLC46A3Q7Z3Q1 461 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 ZNF227Q86WZ6 799 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 BPIFB6Q8NFQ5 453 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 TSPAN14Q8NG11 270 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 OR2T33Q8NG76 320 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 STK35Q8TDR2 534 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 APH1BQ8WW43 257 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 LIPHQ8WWY8 451 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 KTI12Q96EK9 354 aaPredicted RBP19.06■□□□□ 0.64
VPS28-208ENST00000527797 JSRP1Q96MG2 331 aaPredicted RBP19.06■□□□□ 0.64
VPS28-208ENST00000527797 AGAP4Q96P64 663 aa19.06■□□□□ 0.64
VPS28-208ENST00000527797 TRAV36DV7A0A075B6V5 113 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 A0A087WZY1 265 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 A6NL46 340 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 M0R129 80 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 SLC1A7O00341 560 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 WBP4O75554 376 aaKnown RBP19.05■□□□□ 0.64
VPS28-208ENST00000527797 CRHBPP24387 322 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 FXYD6P3P58550 94 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 CSNK2BP67870 215 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 CDC20Q12834 499 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 TIGD3Q6B0B8 471 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 SLC43A2Q8N370 569 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 LRRC17Q8N6Y2 441 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 OR8J1Q8NGP2 316 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 KCNE4Q8WWG9 221 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 ZNF566Q969W8 418 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 SLC38A2Q96QD8 506 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 POLDIP3Q9BY77 421 aaKnown RBP19.05■□□□□ 0.64
VPS28-208ENST00000527797 MCCC2Q9HCC0 563 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 NANSQ9NR45 359 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 CHRNA9Q9UGM1 479 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 IL20RAQ9UHF4 553 aa19.05■□□□□ 0.64
VPS28-208ENST00000527797 LRRN3E7EW58 273 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 TRIM3O75382 744 aaPredicted RBP19.04■□□□□ 0.64
VPS28-208ENST00000527797 WDPCPO95876 746 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 F10P00742 488 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 HMGN1P05114 100 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 CCDC159P0C7I6 412 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 CNR1P21554 472 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 RPS5P46782 204 aaKnown RBP19.04■□□□□ 0.64
VPS28-208ENST00000527797 DNASE1L1P49184 302 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 PCYT1AP49585 367 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 MAP2K6P52564 334 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 SNRPGP62308 76 aaKnown RBP19.04■□□□□ 0.64
VPS28-208ENST00000527797 SNAPC1Q16533 368 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 PGGHGQ32M88 737 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 OR4Q3Q8NH05 313 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 TAAR8Q969N4 342 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 NPAS1Q99742 590 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 UBQLN3Q9H347 655 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 SERINC1Q9NRX5 453 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 SCN3BQ9NY72 215 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 GPR83Q9NYM4 423 aa19.04■□□□□ 0.64
VPS28-208ENST00000527797 TRIM64A6NGJ6 449 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 CBR3O75828 277 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 EIF1P41567 113 aaKnown RBP19.03■□□□□ 0.64
VPS28-208ENST00000527797 DSCR4P56555 118 aaPredicted RBP19.03■□□□□ 0.64
VPS28-208ENST00000527797 FHL1Q13642 323 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 C1orf140Q5VVS0 124 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 SPINK14Q6IE38 97 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 CCDC103Q8IW40 242 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 TCEANCQ8N8B7 351 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 ZBTB8AQ96BR9 441 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 GNRHR2Q96P88 292 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 IL4I1Q96RQ9 567 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 IFT27Q9BW83 186 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 MRPS26Q9BYN8 205 aaKnown RBP19.03■□□□□ 0.64
VPS28-208ENST00000527797 CLN6Q9NWW5 311 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 PLA2G3Q9NZ20 509 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 DMXL1Q9Y485 3027 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 ZC3H12DA2A288 527 aaKnown RBP19.03■□□□□ 0.64
VPS28-208ENST00000527797 ZNF208O43345 1280 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 NPIPB7O75200 414 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 NEURL1O76050 574 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 NDUFB2O95178 105 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 SMIM18P0DKX4 95 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 EEF1B2P24534 225 aaKnown RBP19.03■□□□□ 0.64
VPS28-208ENST00000527797 DPP4P27487 766 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 ADH6P28332 368 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 SLC6A6P31641 620 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 LTBQ06643 244 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 OR1C1Q15619 314 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 SMN1Q16637 294 aaKnown RBP19.03■□□□□ 0.64
VPS28-208ENST00000527797 ZNF248Q8NDW4 579 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 POC1BQ8TC44 478 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 Q96MT0 163 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 MOGAT1Q96PD6 335 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 ENKD1Q9H0I2 346 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms