RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 INPP5KQ9BT40 448 aa12.48□□□□□ -0.41
CPSF1-201ENST00000526271 INTS9Q9NV88 658 aaKnown RBP12.48□□□□□ -0.41
CPSF1-201ENST00000526271 FAIMQ9NVQ4 179 aa12.48□□□□□ -0.41
CPSF1-201ENST00000526271 ZDHHC2Q9UIJ5 367 aa12.48□□□□□ -0.41
CPSF1-201ENST00000526271 FAF1Q9UNN5 650 aaPredicted RBP12.48□□□□□ -0.41
CPSF1-201ENST00000526271 ZC3H12DA2A288 527 aaKnown RBP12.47□□□□□ -0.41
CPSF1-201ENST00000526271 TMEM114B3SHH9 223 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 H3BNH8 94 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 AP3D1O14617 1153 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 KLF11O14901 512 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 KIAA0513O60268 411 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 LMX1BO60663 402 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 CYP7B1O75881 506 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 PMS2P2O95744 297 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 CSTAP01040 98 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 SERPINE1P05121 402 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 IGFBP1P08833 259 aaPredicted RBP12.47□□□□□ -0.41
CPSF1-201ENST00000526271 G6PDP11413 515 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 MATN1P21941 496 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 DSCR9P59020 149 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 RAB35Q15286 201 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 ARHGAP11BQ3KRB8 267 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 ATP6AP1LQ52LC2 224 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 CYB5R2Q6BCY4 276 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 ZNF544Q6NX49 715 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 TMEM108Q6UXF1 575 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 C6orf120Q7Z4R8 191 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 FBXL14Q8N1E6 418 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 PROX1Q92786 737 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 RAB8BQ92930 207 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 RADILQ96JH8 1075 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 BEX2Q9BXY8 128 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 SAP130Q9H0E3 1048 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 SLC17A5Q9NRA2 495 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 TAS2R16Q9NYV7 291 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 MGAT4BQ9UQ53 548 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 NOSIPQ9Y314 301 aaKnown RBP12.47□□□□□ -0.41
CPSF1-201ENST00000526271 FLVCR1Q9Y5Y0 555 aa12.47□□□□□ -0.41
CPSF1-201ENST00000526271 TMEM72A0PK05 275 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 ITM2AO43736 263 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 C8BP07358 591 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 USF1P22415 310 aaPredicted RBP12.46□□□□□ -0.41
CPSF1-201ENST00000526271 THBS2P35442 1172 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 EFNA4P52798 201 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 ABCE1P61221 599 aaKnown RBP12.46□□□□□ -0.41
CPSF1-201ENST00000526271 LSM11P83369 360 aaKnown RBP eCLIP12.46□□□□□ -0.418e-7■■■□□ 17
CPSF1-201ENST00000526271 LGALS3BPQ08380 585 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 STX3Q13277 289 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 FAM120AOSQ5T036 256 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 OR4F3Q6IEY1 312 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 UBE2J2Q8N2K1 259 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 MIPOL1Q8TD10 442 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 CKAP2Q8WWK9 683 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 CNOT9Q92600 299 aaKnown RBP12.46□□□□□ -0.41
CPSF1-201ENST00000526271 PPP3R2Q96LZ3 170 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 DUSP26Q9BV47 211 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 C20orf27Q9GZN8 174 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 OR51I1Q9H343 314 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 SEC61A2Q9H9S3 476 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 ASB6Q9NWX5 421 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 CHRNA9Q9UGM1 479 aa12.46□□□□□ -0.41
CPSF1-201ENST00000526271 MEGF8Q7Z7M0 2845 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 CIB4A0PJX0 185 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 CCT8L1PA6NM43 557 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 ANKRD28O15084 1053 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 SNNO75324 88 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-201ENST00000526271 SKAP2O75563 359 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-201ENST00000526271 SNUPNO95149 360 aaKnown RBP12.45□□□□□ -0.42
CPSF1-201ENST00000526271 OR12D1P0DN82 309 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 CCNA2P20248 432 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 IL2RGP31785 369 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 RYKP34925 604 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 SLC1A6P48664 564 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 BST1Q10588 318 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 MAPK11Q15759 364 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 SPDYE7PQ495Y7 208 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 ATG16L1Q676U5 607 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 LINGO2Q7L985 606 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 MYPOPQ86VE0 399 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-201ENST00000526271 ANKS4BQ8N8V4 417 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 MAGEB18Q96M61 343 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 ZNF385AQ96PM9 386 aaKnown RBP12.45□□□□□ -0.42
CPSF1-201ENST00000526271 SORT1Q99523 831 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 NELFAQ9H3P2 528 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 CHODLQ9H9P2 273 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 EML4Q9HC35 981 aaKnown RBP12.45□□□□□ -0.42
CPSF1-201ENST00000526271 HAO1Q9UJM8 370 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 POU2F3Q9UKI9 436 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 MOKQ9UQ07 419 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-201ENST00000526271 ATP23Q9Y6H3 246 aa12.45□□□□□ -0.42
CPSF1-201ENST00000526271 DYSFO75923 2080 aa12.44□□□□□ -0.42
CPSF1-201ENST00000526271 RNF103-CHMP3A0A140T963 221 aa12.44□□□□□ -0.42
CPSF1-201ENST00000526271 STX11O75558 287 aa12.44□□□□□ -0.42
CPSF1-201ENST00000526271 LYPLA1O75608 230 aaPredicted RBP12.44□□□□□ -0.42
CPSF1-201ENST00000526271 KRT16P08779 473 aa12.44□□□□□ -0.42
CPSF1-201ENST00000526271 TFPIP10646 304 aa12.44□□□□□ -0.42
CPSF1-201ENST00000526271 PGCP20142 388 aa12.44□□□□□ -0.42
CPSF1-201ENST00000526271 SOAT1P35610 550 aa12.44□□□□□ -0.42
CPSF1-201ENST00000526271 APOBEC1P41238 236 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms