RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	C1orf50	Q9BV19	199 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	BHLHE41	Q9C0J9	482 aa	Predicted RBP	13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	OR11A1	Q9GZK7	315 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	ZNF350	Q9GZX5	532 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	SERHL2	Q9H4I8	314 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	TMEM181	Q9P2C4	612 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	MID2	Q9UJV3	735 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	TRAPPC4	Q9Y296	219 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	SLC35A3	Q9Y2D2	325 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	FLVCR1	Q9Y5Y0	555 aa		13.76	□□□□□ -0.21
LMNA-223	ENST00000515459	COPE	O14579	308 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	EIF1B	O60739	113 aa	Known RBP	13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	MPG	P29372	298 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	RYK	P34925	604 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	SERPINF1	P36955	418 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	RUNX1T1	Q06455	604 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	PCLAF	Q15004	111 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	ATP6AP1L	Q52LC2	224 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	TSPO2	Q5TGU0	170 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	OLIG3	Q7RTU3	272 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	C16orf62	Q7Z3J2	963 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	C6orf120	Q7Z4R8	191 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	ADGRG3	Q86Y34	549 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	ANKS4B	Q8N8V4	417 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	OIT3	Q8WWZ8	545 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	DUSP26	Q9BV47	211 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	BPESC1	Q9GZL8	116 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	EXD2	Q9NVH0	621 aa		13.75	□□□□□ -0.21
LMNA-223	ENST00000515459	CHRNG	P07510	517 aa		13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	PRPS1L1	P21108	318 aa		13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	SLC35A1	P78382	337 aa		13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	MAPK14	Q16539	360 aa		13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	XKR7	Q5GH72	579 aa		13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	IL23R	Q5VWK5	629 aa		13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	MEX3D	Q86XN8	651 aa	Known RBP	13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	IFT20	Q8IY31	132 aa		13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	SLC35G5	Q96KT7	338 aa		13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	C16orf45	Q96MC5	204 aa	Predicted RBP	13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	KCNS3	Q9BQ31	491 aa		13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	NAA11	Q9BSU3	229 aa	Predicted RBP	13.74	□□□□□ -0.21
LMNA-223	ENST00000515459	SOX7	Q9BT81	388 aa		13.74	□□□□□ -0.21
LMNA-223	ENST00000515459		B9A039	149 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	BCAS1	O75363	584 aa	Predicted RBP	13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	FAM153B	P0C7A2	387 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	KRT4	P19013	534 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	CCNA2	P20248	432 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	HTR3A	P46098	478 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	SLC17A1	Q14916	467 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	FAM153C	Q494X1	144 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	C6orf136	Q5SQH8	315 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	TYW3	Q6IPR3	259 aa	Known RBP	13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	SPATA19	Q7Z5L4	167 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	RIMKLA	Q8IXN7	391 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	CLEC4F	Q8N1N0	589 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	FNDC5	Q8NAU1	212 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	AGR3	Q8TD06	166 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	DDIT4L	Q96D03	193 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	C1orf159	Q96HA4	380 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	TXLNGY	Q9BZA5	131 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	OR51I1	Q9H343	314 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	OBP2B	Q9NPH6	170 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	POLE3	Q9NRF9	147 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	CA10	Q9NS85	328 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	PCDHGB4	Q9UN71	923 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	WDR45	Q9Y484	360 aa		13.73	□□□□□ -0.21
LMNA-223	ENST00000515459	IGHV1-18	A0A0C4DH31	117 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	RNF103-CHMP3	A0A140T963	221 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	LRP5L	A4QPB2	252 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	KLF11	O14901	512 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	NPHS1	O60500	1241 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	PDE5A	O76074	875 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	SLU7	O95391	586 aa	Known RBP	13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	AGR2	O95994	175 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	CRYAA	P02489	173 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	GUSB	P08236	651 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	ITGA2	P17301	1181 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	CDH2	P19022	906 aa	Predicted RBP	13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	IDH2	P48735	452 aa	Known RBP	13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	PGS1	Q32NB8	556 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	HIKESHI	Q53FT3	197 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	ATAD3B	Q5T9A4	648 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	EMB	Q6PCB8	327 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	C12orf54	Q6X4T0	127 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	ARFGAP2	Q8N6H7	521 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	POMGNT2	Q8NAT1	580 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	MIPOL1	Q8TD10	442 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	XAGE5	Q8WWM1	108 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	PMM1	Q92871	262 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	TMEM45B	Q96B21	275 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	BOD1	Q96IK1	185 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	C3orf30	Q96M34	536 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	SLC38A2	Q96QD8	506 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	RAB1B	Q9H0U4	201 aa		13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	EXOSC3	Q9NQT5	275 aa	Known RBP	13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	TMEFF2	Q9UIK5	374 aa	Predicted RBP	13.72	□□□□□ -0.21
LMNA-223	ENST00000515459	TMED7-TICAM2	A0A0A6YYA0	188 aa		13.71	□□□□□ -0.21
LMNA-223	ENST00000515459	ZNF208	O43345	1280 aa		13.71	□□□□□ -0.21
LMNA-223	ENST00000515459	OR4A8	P0C604	315 aa		13.71	□□□□□ -0.21
LMNA-223	ENST00000515459	OR12D1	P0DN82	309 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms