RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CFAP65Q6ZU64 1925 aaKnown RBP5.56□□□□□ -1.52
NUP54-215ENST00000514313 KLHL41O60662 606 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 LALBAP00709 142 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 RBMY1CP0DJD4 496 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 SFTPCP11686 197 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 BIDP55957 195 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 OR2G6Q5TZ20 316 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 PGAP1Q75T13 922 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 NRMQ8IXM6 262 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 TTC5Q8N0Z6 440 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 GPR137CQ8N3F9 429 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 FAM222BQ8WU58 562 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 SRXN1Q9BYN0 137 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 ANKRD19PQ9H560 264 aa5.55□□□□□ -1.52
NUP54-215ENST00000514313 IQANK1A0A1B0GTG1 560 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 TCRBV9S1A1TA0A576 114 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 A8MXQ7 604 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 OR8U8P0C7N1 319 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 NPR2P20594 1047 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 CD1CP29017 333 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 PKNOX1P55347 436 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 CHRNB3Q05901 458 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 AANATQ16613 207 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 GSG1Q2KHT4 349 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 ISXQ2M1V0 245 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 CARD16Q5EG05 197 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 ATAD3CQ5T2N8 411 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 FRA10AC1Q70Z53 315 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 UTS2BQ765I0 119 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 RHOXF1Q8NHV9 184 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 SERAC1Q96JX3 654 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 GAL3ST1Q99999 423 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 C19orf24Q9BVV8 132 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 UBXN6Q9BZV1 441 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 NMUR2Q9GZQ4 415 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 REEP4Q9H6H4 257 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 SLC2A8Q9NY64 477 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 UBQLN1Q9UMX0 589 aaKnown RBP5.54□□□□□ -1.52
NUP54-215ENST00000514313 CA5BQ9Y2D0 317 aa5.54□□□□□ -1.52
NUP54-215ENST00000514313 IGLV8-61A0A075B6I0 122 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 A0A1W2PPV9 198 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 HEATR9A2RTY3 570 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 GFYI3L273 518 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 PABPC4LP0CB38 370 aaKnown RBP5.53□□□□□ -1.52
NUP54-215ENST00000514313 CCDC166P0CW27 439 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 ANXA13P27216 316 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 HNRNPH3P31942 346 aaKnown RBP5.53□□□□□ -1.52
NUP54-215ENST00000514313 UGT1A3P35503 534 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 BCL2L1Q07817 233 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 PRR4Q16378 134 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 C15orf32Q32M92 178 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 OR2B11Q5JQS5 317 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 OR52E8Q6IFG1 317 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 RNASEKQ6P5S7 137 aaKnown RBP5.53□□□□□ -1.52
NUP54-215ENST00000514313 OR2L3Q8NG85 312 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 DNAJA4Q8WW22 397 aaPredicted RBP5.53□□□□□ -1.52
NUP54-215ENST00000514313 UFD1Q92890 307 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.53□□□□□ -1.52
NUP54-215ENST00000514313 ZNF641Q96N77 438 aaPredicted RBP5.53□□□□□ -1.52
NUP54-215ENST00000514313 PANX2Q96RD6 677 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 KLHL28Q9NXS3 571 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 APOBEC3BQ9UH17 382 aaKnown RBP5.53□□□□□ -1.52
NUP54-215ENST00000514313 STAP1Q9ULZ2 295 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 PEX16Q9Y5Y5 336 aa5.53□□□□□ -1.52
NUP54-215ENST00000514313 IGHV1OR15-1A0A075B7D0 117 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 WWP2O00308 870 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 DCTN6O00399 190 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 STAMBPO95630 424 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 OXSR1O95747 527 aaPredicted RBP5.52□□□□□ -1.53
NUP54-215ENST00000514313 CST1P01037 141 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 THY1P04216 161 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 CASP14P31944 242 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 OPRD1P41143 372 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 GYG1P46976 350 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 TGM3Q08188 693 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 BST2Q10589 180 aaKnown RBP5.52□□□□□ -1.53
NUP54-215ENST00000514313 MRPL28Q13084 256 aaKnown RBP5.52□□□□□ -1.53
NUP54-215ENST00000514313 PAGE2BQ5JRK9 111 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 PRAMEF20Q5VT98 475 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 PAQR7Q86WK9 346 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 HPS6Q86YV9 775 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 OR13F1Q8NGS4 319 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 ZPLD1Q8TCW7 415 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 SLC25A38Q96DW6 304 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 PGLYRP4Q96LB8 373 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 KIR2DL4Q99706 377 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 PAXXQ9BUH6 204 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 PPA2Q9H2U2 334 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 NT5MQ9NPB1 228 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 THUMPD1Q9NXG2 353 aaKnown RBP5.52□□□□□ -1.53
NUP54-215ENST00000514313 HOXC10Q9NYD6 342 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 ABCG2Q9UNQ0 655 aa5.52□□□□□ -1.53
NUP54-215ENST00000514313 K7N7A8 449 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 ABCD4O14678 606 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 HSD17B6O14756 317 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 WBP4O75554 376 aaKnown RBP5.51□□□□□ -1.53
NUP54-215ENST00000514313 CGAP01215 116 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 ZP3P21754 424 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 CCNCP24863 283 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 AQP1P29972 269 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms