RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ZNF786Q8N393 782 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 OR5W2Q8NH69 310 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 CDS1Q92903 461 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 RAB1BQ9H0U4 201 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 MID1IP1Q9NPA3 183 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 DCTN4Q9UJW0 460 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 CMYA5Q8N3K9 4069 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 IGHV1-18A0A0C4DH31 117 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 B4DSR2 109 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 NPIPB9F8W1W9 429 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 GTPBP1O00178 669 aaKnown RBP14.3□□□□□ -0.12
VIM-208ENST00000497849 BIRC5O15392 142 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 PDE5AO76074 875 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 ENO1P06733 434 aaKnown RBP14.3□□□□□ -0.12
VIM-208ENST00000497849 FRKP42685 505 aaPredicted RBP14.3□□□□□ -0.12
VIM-208ENST00000497849 SLC16A1P53985 500 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 GYS2P54840 703 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 FOXA1P55317 472 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 PRPS1P60891 318 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 CSNK2A1P68400 391 aaPredicted RBP14.3□□□□□ -0.12
VIM-208ENST00000497849 NOXRED1Q6NXP6 359 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 UGT2A3Q6UWM9 527 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 THSD4Q6ZMP0 1018 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 SVOPLQ8N434 492 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 JADE3Q92613 823 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 ZNF747Q9BV97 191 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 HOXD1Q9GZZ0 328 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 SAP130Q9H0E3 1048 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 SLC7A10Q9NS82 523 aa14.3□□□□□ -0.12
VIM-208ENST00000497849 NPIPB8E9PQR5 432 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 H3BNH8 94 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 GPR171O14626 319 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 KLF11O14901 512 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 NPHS1O60500 1241 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 DNAJA2O60884 412 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 IGFBP1P08833 259 aaPredicted RBP14.29□□□□□ -0.12
VIM-208ENST00000497849 LCP2Q13094 533 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 PDCD2Q16342 344 aaPredicted RBP14.29□□□□□ -0.12
VIM-208ENST00000497849 SYT14P1Q58G82 188 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 C1QTNF12Q5T7M4 302 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 CDC73Q6P1J9 531 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 CCDC103Q8IW40 242 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 TMCO5AQ8N6Q1 288 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 NEU4Q8WWR8 484 aaPredicted RBP14.29□□□□□ -0.12
VIM-208ENST00000497849 STACQ99469 402 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 C20orf27Q9GZN8 174 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 PIGUQ9H490 435 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 DUSP22Q9NRW4 184 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 HIF1ANQ9NWT6 349 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 FIS1Q9Y3D6 152 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 DTNAQ9Y4J8 743 aa14.29□□□□□ -0.12
VIM-208ENST00000497849 LYNX1G3V0Z9 82 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 ZNF264O43296 627 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 EIF4E2O60573 245 aaKnown RBP14.28□□□□□ -0.12
VIM-208ENST00000497849 SERPINE1P05121 402 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 HMGN2P05204 90 aaKnown RBP14.28□□□□□ -0.12
VIM-208ENST00000497849 LYNX1P0DP58 116 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 IFNGR1P15260 489 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 ATP6V1C1P21283 382 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 LIMS1P48059 325 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 CCR4P51679 360 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 ATP12AP54707 1039 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 PKNOX1P55347 436 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 SESN3P58005 492 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 STX3Q13277 289 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 SCGB2A2Q13296 93 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 CBFBQ13951 182 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 KIAA0040Q15053 153 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 HIKESHIQ53FT3 197 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 TSPO2Q5TGU0 170 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 CLEC6AQ6EIG7 209 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 VHLLQ6RSH7 139 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 ZFP28Q8NHY6 868 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 PIGXQ8TBF5 258 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 AGR3Q8TD06 166 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 WDR60Q8WVS4 1066 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 TMEM186Q96B77 213 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 FAM120BQ96EK7 910 aaKnown RBP14.28□□□□□ -0.12
VIM-208ENST00000497849 DNAJA3Q96EY1 480 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 ZNF764Q96H86 408 aaPredicted RBP14.28□□□□□ -0.12
VIM-208ENST00000497849 ARL5BQ96KC2 179 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 THUMPD3Q9BV44 507 aaKnown RBP14.28□□□□□ -0.12
VIM-208ENST00000497849 INTS9Q9NV88 658 aaKnown RBP14.28□□□□□ -0.12
VIM-208ENST00000497849 UPB1Q9UBR1 384 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 PCDHB14Q9Y5E9 798 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 KCNE3Q9Y6H6 103 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 NOTCH1P46531 2555 aa14.28□□□□□ -0.12
VIM-208ENST00000497849 TMEM233B4DJY2 109 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 WNT11O96014 354 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 EFNA1P20827 205 aaPredicted RBP14.27□□□□□ -0.13
VIM-208ENST00000497849 MDH1P40925 334 aaKnown RBP14.27□□□□□ -0.13
VIM-208ENST00000497849 KHKP50053 298 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 ABCE1P61221 599 aaKnown RBP14.27□□□□□ -0.13
VIM-208ENST00000497849 TGFBR3Q03167 851 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 BST1Q10588 318 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 MERTKQ12866 999 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 LASP1Q14847 261 aaKnown RBP14.27□□□□□ -0.13
VIM-208ENST00000497849 MIDNQ504T8 468 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 DCST2Q5T1A1 773 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 SHQ1Q6PI26 577 aaKnown RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms