RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 A0A0J9YY10 115 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 BHLHE40O14503 412 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 RGS9O75916 674 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 AGR2O95994 175 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 BMP7P18075 431 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 FGF9P31371 208 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 MAZP56270 477 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 POU6F2P78424 691 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 SFXN4Q6P4A7 337 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 CHMP1BQ7LBR1 199 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF687Q8N1G0 1237 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 OR52L1Q8NGH7 329 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 PTP4A1Q93096 173 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 MSANTD3Q96H12 275 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 GON7Q9BXV9 100 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 STMN3Q9NZ72 180 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 FLRT3Q9NZU0 649 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 PCDHGB7Q9Y5F8 929 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 LRP4O75096 1905 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 C4orf47A7E2U8 309 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 LEUTXA8MZ59 168 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 IL9P15248 144 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 LTBRP36941 435 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 HHEXQ03014 270 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 TOR2AQ5JU69 321 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 NIPAL3Q6P499 406 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 SAMD14Q8IZD0 417 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 TOE1Q96GM8 510 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 PDCD1LG2Q9BQ51 273 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 SPRTNQ9H040 489 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 BABAM2Q9NXR7 383 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 TMEM5Q9Y2B1 443 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 CACNG2Q9Y698 323 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 SPACA6W5XKT8 324 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 DMDP11532 3685 aa15.22■□□□□ 0.03
CCDC88B-210ENST00000494566 MPDZO75970 2070 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 POM121CA8CG34 1229 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 FZD7O75084 574 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 CRMP1Q14194 572 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 PRPF38BQ5VTL8 546 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 SIGIRRQ6IA17 410 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 PARGQ86W56 976 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 PIAS4Q8N2W9 510 aaPredicted RBP15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 MED18Q9BUE0 208 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 LYRM4Q9HD34 91 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 KLHL21Q9UJP4 597 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 SMAD9O15198 467 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 THBS1P07996 1170 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 THEGLP0DJG4 465 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 CTSEP14091 401 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 RPS4Y1P22090 263 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 UBE2IP63279 158 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 BTG2P78543 158 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 OC90Q02509 493 aaPredicted RBP15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 HES5Q5TA89 166 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 CCDC28AQ8IWP9 274 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 UXS1Q8NBZ7 420 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 DUSP18Q8NEJ0 188 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 SDR9C7Q8NEX9 313 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 ASB12Q8WXK4 309 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 NR4A3Q92570 626 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 SPACA7Q96KW9 195 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 TNFRSF13CQ96RJ3 184 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 TIMP4Q99727 224 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 SOSTQ9BQB4 213 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 EXOGQ9Y2C4 368 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 SPEF1Q9Y4P9 236 aa15.21■□□□□ 0.03
CCDC88B-210ENST00000494566 PCDH15Q96QU1 1955 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 IRGMA1A4Y4 181 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 TNFRSF10CO14798 259 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 BRINP1O60477 761 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 IGHA1P01876 353 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 TRAPPC2P0DI81 140 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 TRAPPC2BP0DI82 140 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 BTCP35070 178 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 PITPNBP48739 271 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 PGDP52209 483 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 ATP12AP54707 1039 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 PSG6Q00889 435 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 FOXK2Q01167 660 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 PXDC1Q5TGL8 231 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 CD200R1LQ6Q8B3 271 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 TOMM5Q8N4H5 51 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 ZNF527Q8NB42 609 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 GPBAR1Q8TDU6 330 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 GHSRQ92847 366 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 DERL3Q96Q80 235 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 TPSD1Q9BZJ3 242 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 FBRSQ9HAH7 460 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 DUSP22Q9NRW4 184 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 ASXL3Q9C0F0 2248 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 A0A1B0GVT2 93 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 A0A1B0GWA3 101 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 SLC43A1O75387 559 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 SOX30O94993 753 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 HMGN1P05114 100 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 DRD1P21728 446 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 WDR45BQ5MNZ6 344 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms