RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 NKX2-4Q9H2Z4 354 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 NUDT15Q9NV35 164 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 CHRNA9Q9UGM1 479 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 AK6Q9Y3D8 172 aaKnown RBP16.5■□□□□ 0.23
VIM-206ENST00000487938 CTHP32929 405 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 PSMB10P40306 273 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 GDI2P50395 445 aaKnown RBP16.5■□□□□ 0.23
VIM-206ENST00000487938 ACTC1P68032 377 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 ACTA1P68133 377 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 BICRALQ6AI39 1079 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 PLCZ1Q86YW0 608 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 OR13H1Q8NG92 308 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 SLC2A12Q8TD20 617 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 SLC37A2Q8TED4 501 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 PHF21AQ96BD5 680 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 ORAI3Q9BRQ5 295 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 BRD7Q9NPI1 651 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 POLE3Q9NRF9 147 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 HCN3Q9P1Z3 774 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 RPS6KB2Q9UBS0 482 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 GNG8Q9UK08 70 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 EYSQ5T1H1 3165 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 TGFBR3LH3BV60 316 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 BTG1P62324 171 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 GPLD1P80108 840 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 DGCR2P98153 550 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 ZNHIT3Q15649 155 aaPredicted RBP16.49■□□□□ 0.23
VIM-206ENST00000487938 CEP78Q5JTW2 689 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 LYPD8Q6UX82 237 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 TMEM184AQ6ZMB5 413 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 PRSS45Q7RTY3 260 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 SNX33Q8WV41 574 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 PMM1Q92871 262 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 RIT1Q92963 219 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 SNAPC3Q92966 411 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 NMNAT3Q96T66 252 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 PDCD1LG2Q9BQ51 273 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 FBRSQ9HAH7 460 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 SERTAD3Q9UJW9 196 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 ENTPD2Q9Y5L3 495 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 KNL1Q8NG31 2342 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 A0A0A6YYC8 382 aaPredicted RBP16.49■□□□□ 0.23
VIM-206ENST00000487938 I3L1I5 382 aaPredicted RBP16.49■□□□□ 0.23
VIM-206ENST00000487938 ERVH48-1M5A8F1 160 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 PSMD9O00233 223 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 PRKNO60260 465 aaPredicted RBP16.49■□□□□ 0.23
VIM-206ENST00000487938 TNFP01375 233 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 EPXP11678 715 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 ST6GAL1P15907 406 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 RPL4P36578 427 aaKnown RBP16.49■□□□□ 0.23
VIM-206ENST00000487938 GBX2P52951 348 aaPredicted RBP16.49■□□□□ 0.23
VIM-206ENST00000487938 HYAL1Q12794 435 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 POU4F2Q12837 409 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 C1orf61Q13536 156 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 SIAH3Q8IW03 269 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 IZUMO1Q8IYV9 350 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 SLC22A18ASQ8N1D0 253 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 RCBTB1Q8NDN9 531 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 RBM18Q96H35 190 aaKnown RBP16.49■□□□□ 0.23
VIM-206ENST00000487938 OR14A2Q96R54 314 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 GTPBP2Q9BX10 602 aaKnown RBP16.49■□□□□ 0.23
VIM-206ENST00000487938 GSDMCQ9BYG8 508 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 MED28Q9H204 178 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 WSB2Q9NYS7 404 aaPredicted RBP16.49■□□□□ 0.23
VIM-206ENST00000487938 LRIT1Q9P2V4 623 aa16.49■□□□□ 0.23
VIM-206ENST00000487938 SPTBP11277 2137 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 TRBV2A0A0J9YWF9 115 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 OGG1O15527 345 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 FABP7O15540 132 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 NDUFB2O95178 105 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 RBM34P42696 430 aaKnown RBP16.48■□□□□ 0.23
VIM-206ENST00000487938 SIRPAP78324 504 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 MANEAQ5SRI9 462 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 ULK3Q6PHR2 472 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 LINC00114Q6XXX2 140 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 GRAMD2AQ8IUY3 354 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 SLC35F2Q8IXU6 374 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 TOMM5Q8N4H5 51 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 LSMEM1Q8N8F7 131 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 TEX19Q8NA77 164 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 ZPLD1Q8TCW7 415 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 YIPF5Q969M3 257 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 CNN2Q99439 309 aaKnown RBP16.48■□□□□ 0.23
VIM-206ENST00000487938 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.48■□□□□ 0.23
VIM-206ENST00000487938 NPFFR2Q9Y5X5 522 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 FAM171A2A8MVW0 826 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 IDSB3KWA1 339 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 SELENOFO60613 162 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 SERPINI2O75830 405 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 DHFRP00374 187 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 OR2T7P0C7T2 308 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 EDNRAP25101 427 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 GIFP27352 417 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 AKT2P31751 481 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 CCR6P51684 374 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 RPS11P62280 158 aaKnown RBP eCLIP16.48■□□□□ 0.23
VIM-206ENST00000487938 MAT1AQ00266 395 aaKnown RBP16.48■□□□□ 0.23
VIM-206ENST00000487938 STX4Q12846 297 aa16.48■□□□□ 0.23
VIM-206ENST00000487938 ZNF267Q14586 743 aaPredicted RBP16.48■□□□□ 0.23
VIM-206ENST00000487938 CDK5R1Q15078 307 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms