RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ARL8AQ96BM9 186 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 COQ8BQ96D53 544 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 VRK1Q99986 396 aaPredicted RBP13.34□□□□□ -0.27
MCF2L-228ENST00000487354 DCDC2Q9UHG0 476 aa13.34□□□□□ -0.27
MCF2L-228ENST00000487354 KLF11O14901 512 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 PDE5AO76074 875 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 MPGP29372 298 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 CALCRP30988 508 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 MAGEA8P43361 318 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 PRPS1P60891 318 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 HBA1P69905 142 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 CKAP4Q07065 602 aaKnown RBP13.33□□□□□ -0.28
MCF2L-228ENST00000487354 ARHGAP11BQ3KRB8 267 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 XKR7Q5GH72 579 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 CFAP157Q5JU67 520 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 C1QTNF12Q5T7M4 302 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 DEF8Q6ZN54 512 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 GRINAQ7Z429 371 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 SPATA19Q7Z5L4 167 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 MYPOPQ86VE0 399 aaPredicted RBP13.33□□□□□ -0.28
MCF2L-228ENST00000487354 RIMKLAQ8IXN7 391 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 LINC01356Q8N9X3 169 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 HPS1Q92902 700 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 TMEM45BQ96B21 275 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 ZHX1-C8orf76Q96EF9 292 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 SLC38A2Q96QD8 506 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 NELFAQ9H3P2 528 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 PSMC3IPQ9P2W1 217 aaPredicted RBP13.33□□□□□ -0.28
MCF2L-228ENST00000487354 CRNNQ9UBG3 495 aaPredicted RBP13.33□□□□□ -0.28
MCF2L-228ENST00000487354 SLC9A8Q9Y2E8 581 aa13.33□□□□□ -0.28
MCF2L-228ENST00000487354 B9A039 149 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 PIP5K1BO14986 540 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 STX11O75558 287 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 CHRNGP07510 517 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 OR4A8P0C604 315 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 APEX1P27695 318 aaKnown RBP13.32□□□□□ -0.28
MCF2L-228ENST00000487354 IDH3GP51553 393 aaPredicted RBP13.32□□□□□ -0.28
MCF2L-228ENST00000487354 CHN2P52757 468 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 OR2B6P58173 313 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 LGALS3BPQ08380 585 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 RIN1Q13671 783 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 PCLAFQ15004 111 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 SPDYE7PQ495Y7 208 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 ATP6AP1LQ52LC2 224 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 TYW3Q6IPR3 259 aaKnown RBP13.32□□□□□ -0.28
MCF2L-228ENST00000487354 RINLQ6ZS11 566 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 EIF3MQ7L2H7 374 aaKnown RBP13.32□□□□□ -0.28
MCF2L-228ENST00000487354 LINGO2Q7L985 606 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 ZCCHC24Q8N2G6 241 aaKnown RBP13.32□□□□□ -0.28
MCF2L-228ENST00000487354 ZNF540Q8NDQ6 660 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 ZFAND2BQ8WV99 257 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 TWIST2Q8WVJ9 160 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 MOAP1Q96BY2 351 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 ZG16BQ96DA0 208 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 ZNF385AQ96PM9 386 aaKnown RBP13.32□□□□□ -0.28
MCF2L-228ENST00000487354 SNX18Q96RF0 628 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 KATNB1Q9BVA0 655 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 GATA5Q9BWX5 397 aaPredicted RBP13.32□□□□□ -0.28
MCF2L-228ENST00000487354 TXLNGYQ9BZA5 131 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 TMEM181Q9P2C4 612 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 UPB1Q9UBR1 384 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 TBK1Q9UHD2 729 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 TRAPPC4Q9Y296 219 aa13.32□□□□□ -0.28
MCF2L-228ENST00000487354 SPIN1Q9Y657 262 aaPredicted RBP13.32□□□□□ -0.28
MCF2L-228ENST00000487354 TMEM72A0PK05 275 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 ZC3H12DA2A288 527 aaKnown RBP13.31□□□□□ -0.28
MCF2L-228ENST00000487354 CLDN24A6NM45 220 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 AP3D1O14617 1153 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 ANKRD28O15084 1053 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 IGLV1-44P01699 117 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 CECR9P0C854 216 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 DAOP14920 347 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 RYKP34925 604 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 SRP14P37108 136 aaKnown RBP13.31□□□□□ -0.28
MCF2L-228ENST00000487354 CLK1P49759 484 aaKnown RBP13.31□□□□□ -0.28
MCF2L-228ENST00000487354 NAAAQ02083 359 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 HGFACQ04756 655 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 TBRG1Q3YBR2 411 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 CCDC153Q494R4 210 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 FRRS1Q6ZNA5 592 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 HMGN2P46Q86SG4 172 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 C10orf107Q8IVU9 208 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 OR1K1Q8NGR3 316 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 C3orf30Q96M34 536 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 C1orf50Q9BV19 199 aa13.31□□□□□ -0.28
MCF2L-228ENST00000487354 TMEM129A0AVI4 362 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 PRAMEF27A3QJZ7 478 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 WNT11O96014 354 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 AK1P00568 194 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 GUSBP08236 651 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 CPA3P15088 417 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 DDX5P17844 614 aaKnown RBP13.3□□□□□ -0.28
MCF2L-228ENST00000487354 CCNA2P20248 432 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 MATN1P21941 496 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 RPL3P39023 403 aaKnown RBP13.3□□□□□ -0.28
MCF2L-228ENST00000487354 P2RY4P51582 365 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 DVL1P1P54792 670 aaPredicted RBP13.3□□□□□ -0.28
MCF2L-228ENST00000487354 TUBA1BP68363 451 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 TUBA4AP68366 448 aa13.3□□□□□ -0.28
MCF2L-228ENST00000487354 TGFBR3Q03167 851 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms