RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TOM1L1O75674 476 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 TGFAP01135 160 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 RHOXF2BP0C7M4 288 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 HNF1AP20823 631 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 BTCP35070 178 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 RPS14P62263 151 aaKnown RBP1.55□□□□□ -2.16
VPS50-216ENST00000484954 EWSR1Q01844 656 aaKnown RBP eCLIP1.55□□□□□ -2.16
VPS50-216ENST00000484954 CHRFAM7AQ494W8 412 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 C12orf60Q5U649 245 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 SLC25A34Q6PIV7 304 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 TMIGD1Q6UXZ0 262 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 RDH10Q8IZV5 341 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 Q8N976 141 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 OR6C4Q8NGE1 309 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 ST8SIA1Q92185 356 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 FCRL1Q96LA6 429 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 SPIN2AQ99865 258 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 SLC6A7Q99884 636 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 SPIN2BQ9BPZ2 258 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 GPR61Q9BZJ8 451 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 ECT2Q9H8V3 914 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 CALHM2Q9HA72 323 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 ZDHHC4Q9NPG8 344 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 MARCOQ9UEW3 520 aaPredicted RBP1.55□□□□□ -2.16
VPS50-216ENST00000484954 IL19Q9UHD0 177 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 NOL7Q9UMY1 257 aaKnown RBP1.55□□□□□ -2.16
VPS50-216ENST00000484954 B9D1Q9UPM9 204 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 PDS5BQ9NTI5 1447 aa1.55□□□□□ -2.16
VPS50-216ENST00000484954 COL27A1Q8IZC6 1860 aaPredicted RBP1.54□□□□□ -2.16
VPS50-216ENST00000484954 IGHV1OR21-1A0A087WYE8 117 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 CCER2I3L3R5 266 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 LANCL1O43813 399 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 ANGPTL7O43827 346 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 JAK2O60674 1132 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 PNMA6AP0CW24 399 aaPredicted RBP1.54□□□□□ -2.16
VPS50-216ENST00000484954 CCDC192P0DO97 292 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 ETS1P14921 441 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 HLA-DPA1P20036 260 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 PAICSP22234 425 aaKnown RBP1.54□□□□□ -2.16
VPS50-216ENST00000484954 CXCL5P42830 114 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 VDAC2P45880 294 aaPredicted RBP1.54□□□□□ -2.16
VPS50-216ENST00000484954 KPNA2P52292 529 aaKnown RBP1.54□□□□□ -2.16
VPS50-216ENST00000484954 SPP2Q13103 211 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 SNTB2Q13425 540 aaKnown RBP1.54□□□□□ -2.16
VPS50-216ENST00000484954 FRMPD2BQ6IN97 320 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 C11orf71Q6IPW1 123 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 HMGN2P46Q86SG4 172 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 OR52B4Q8NGK2 314 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 PNPT1Q8TCS8 783 aaKnown RBP1.54□□□□□ -2.16
VPS50-216ENST00000484954 PINX1Q96BK5 328 aaKnown RBP1.54□□□□□ -2.16
VPS50-216ENST00000484954 SAMD8Q96LT4 415 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 TAAR1Q96RJ0 339 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 CCNL2Q96S94 520 aaPredicted RBP1.54□□□□□ -2.16
VPS50-216ENST00000484954 HIST1H4GQ99525 98 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 NAT9Q9BTE0 207 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 RHBGQ9H310 441 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 ZNF430Q9H8G1 570 aaPredicted RBP1.54□□□□□ -2.16
VPS50-216ENST00000484954 FCGBPQ9Y6R7 5405 aaPredicted RBP1.54□□□□□ -2.16
VPS50-216ENST00000484954 ATP10DQ9P241 1426 aa1.54□□□□□ -2.16
VPS50-216ENST00000484954 IGLV2-18A0A075B6J9 118 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 MROH7-TTC4A0A0A0MT08 1334 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 SUPT3HO75486 399 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 UGT2B17O75795 530 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 CTDNEP1O95476 244 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 IGLV2-23P01705 113 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 TDGF1P13385 188 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 TPSB2P20231 275 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 SHMT2P34897 504 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 ADRA1AP35348 466 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 PTGDSP41222 190 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 TDGF1P3P51864 188 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 DLX1P56177 255 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 GAMTQ14353 236 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 GRB7Q14451 532 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 FRMPD4Q14CM0 1322 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 TPSAB1Q15661 275 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 CEBPEQ15744 281 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 BOLA3Q53S33 107 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 TMEM255AQ5JRV8 349 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 DPY19L4Q7Z388 723 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 TPRA1Q86W33 373 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 CATSPER1Q8NEC5 780 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 OR10G3Q8NGC4 313 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 DTX3LQ8TDB6 740 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 AKR1E2Q96JD6 320 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 VPS35Q96QK1 796 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 NPAS2Q99743 824 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 RIOK1Q9BRS2 568 aaKnown RBP1.53□□□□□ -2.16
VPS50-216ENST00000484954 GSDMCQ9BYG8 508 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 SELENOIQ9C0D9 397 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 SIRT7Q9NRC8 400 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP1.53□□□□□ -2.16
VPS50-216ENST00000484954 IGSF9BQ9UPX0 1349 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 TRAF3IP3Q9Y228 551 aa1.53□□□□□ -2.16
VPS50-216ENST00000484954 CLSPNQ9HAW4 1339 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 E7ESA3 106 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 G3V4G9 280 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 DCTN6O00399 190 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 RBBP9O75884 186 aa1.52□□□□□ -2.17
VPS50-216ENST00000484954 STAMBPO95630 424 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms