RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 IGKV1D-42A0A075B6H8 117 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 A0A087WUU8 490 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 ZC3H12DA2A288 527 aaKnown RBP11.02□□□□□ -0.65
SDC1-206ENST00000482879 NPIPA2E9PIF3 369 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 NPIPA3F8WFD2 350 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 H0Y3Z8 333 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 KPNA4O00629 521 aaPredicted RBP11.02□□□□□ -0.65
SDC1-206ENST00000482879 ZNHIT1O43257 154 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 SEC14L5O43304 696 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 E2F6O75461 281 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 SHC1P29353 583 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 CLK1P49759 484 aaKnown RBP11.02□□□□□ -0.65
SDC1-206ENST00000482879 LHX2P50458 406 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 TDGF1P3P51864 188 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 IST1P53990 364 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 UGT2B15P54855 530 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 CLDN20P56880 219 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 SRYQ05066 204 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 EGR4Q05215 589 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 CRYZQ08257 329 aaKnown RBP11.02□□□□□ -0.65
SDC1-206ENST00000482879 BCL2A1Q16548 175 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 EXOC3L2Q2M3D2 409 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 SYT14P1Q58G82 188 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 C1orf140Q5VVS0 124 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 C1QL3Q5VWW1 255 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 HMBOX1Q6NT76 420 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 UBQLNLQ8IYU4 475 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 RNF113BQ8IZP6 322 aaKnown RBP11.02□□□□□ -0.65
SDC1-206ENST00000482879 MEIOBQ8N635 442 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 OR4C15Q8NGM1 316 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 ACOT11Q8WXI4 607 aaPredicted RBP11.02□□□□□ -0.65
SDC1-206ENST00000482879 SARAFQ96BY9 339 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 DNAJA3Q96EY1 480 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 KLHL15Q96M94 604 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 BBC3Q96PG8 261 aaPredicted RBP11.02□□□□□ -0.65
SDC1-206ENST00000482879 OR5B2Q96R09 309 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 EPYCQ99645 322 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 TIMP4Q99727 224 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 PKP2Q99959 881 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 SLX1AQ9BQ83 275 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 FUZQ9BT04 418 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 ZNF426Q9BUY5 554 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 POTEKPQ9BYX7 375 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 SEMA6AQ9H2E6 1030 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 NTN4Q9HB63 628 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 MED31Q9Y3C7 131 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 BSNQ9UPA5 3926 aa11.02□□□□□ -0.65
SDC1-206ENST00000482879 TRAV36DV7A0A075B6V5 113 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 A0A0J9YW62 118 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 A0A1W2PNR3 127 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 SH3PXD2BA1X283 911 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 OR14I1A6ND48 311 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 H0YC42 278 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 EIF1AYO14602 144 aaKnown RBP11.01□□□□□ -0.65
SDC1-206ENST00000482879 NPIPB7O75200 414 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 CCNB2O95067 398 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 AHSA1O95433 338 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 ZNF708P17019 499 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 FPR1P21462 350 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 DNAJA1P31689 397 aaKnown RBP11.01□□□□□ -0.65
SDC1-206ENST00000482879 PTGS2P35354 604 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 LIMS1P48059 325 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 SUCLG1P53597 346 aaKnown RBP11.01□□□□□ -0.65
SDC1-206ENST00000482879 TPD52P55327 224 aaPredicted RBP11.01□□□□□ -0.65
SDC1-206ENST00000482879 CLDN18P56856 261 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 RCN1Q15293 331 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 SEC23BQ15437 767 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 PDSS1Q5T2R2 415 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 C5orf46Q6UWT4 87 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 GFRALQ6UXV0 394 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 ESPNLQ6ZVH7 1005 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 MBOAT2Q6ZWT7 520 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 TMEM179BQ7Z7N9 219 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 GGNQ86UU5 652 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 NRMQ8IXM6 262 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 PQLC1Q8N2U9 271 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 C10orf53Q8N6V4 93 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 OR4K5Q8NGD3 323 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 PFN4Q8NHR9 129 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 KTI12Q96EK9 354 aaPredicted RBP11.01□□□□□ -0.65
SDC1-206ENST00000482879 CENPNQ96H22 339 aaPredicted RBP11.01□□□□□ -0.65
SDC1-206ENST00000482879 WDYHV1Q96HA8 205 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 ARL5BQ96KC2 179 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 SLC19A3Q9BZV2 496 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 KLHL4Q9C0H6 718 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 CAMK2AQ9UQM7 478 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 HDGFL3Q9Y3E1 203 aa11.01□□□□□ -0.65
SDC1-206ENST00000482879 ARHGAP21Q5T5U3 1957 aa11□□□□□ -0.65
SDC1-206ENST00000482879 SULT2B1O00204 365 aa11□□□□□ -0.65
SDC1-206ENST00000482879 TNFSF11O14788 317 aa11□□□□□ -0.65
SDC1-206ENST00000482879 PIP5K1CO60331 668 aa11□□□□□ -0.65
SDC1-206ENST00000482879 OR10H3O60404 316 aa11□□□□□ -0.65
SDC1-206ENST00000482879 IFI30P13284 250 aa11□□□□□ -0.65
SDC1-206ENST00000482879 EDN3P14138 238 aa11□□□□□ -0.65
SDC1-206ENST00000482879 ANPEPP15144 967 aa11□□□□□ -0.65
SDC1-206ENST00000482879 CPN1P15169 458 aa11□□□□□ -0.65
SDC1-206ENST00000482879 IDUAP35475 653 aa11□□□□□ -0.65
SDC1-206ENST00000482879 RPS5P46782 204 aaKnown RBP11□□□□□ -0.65
SDC1-206ENST00000482879 ARHGDIAP52565 204 aa11□□□□□ -0.65
SDC1-206ENST00000482879 CLDN15P56746 228 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms