RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 SDHDO14521 159 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 GPR171O14626 319 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ABCD4O14678 606 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CHRM4P08173 479 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ITGA5P08648 1049 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 IMPDH2P12268 514 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 BGNP21810 368 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PTAFRP25105 342 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TTKP33981 857 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 RYKP34925 604 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 HTR3AP46098 478 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 IDH2P48735 452 aaKnown RBP10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 KHKP50053 298 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MAP2K6P52564 334 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MVDP53602 400 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 UFM1P61960 85 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TXNL4AP83876 142 aaKnown RBP10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 VEZF1Q14119 521 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SLC17A1Q14916 467 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 STK11Q15831 433 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SYPL1Q16563 259 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 RNF130Q86XS8 419 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 KIRREL3Q8IZU9 778 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ARFGAP2Q8N6H7 521 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ANKFN1Q8N957 763 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ZIC4Q8N9L1 334 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ZNF563Q8TA94 476 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 APH1AQ96BI3 265 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 NUF2Q9BZD4 464 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MTHFD2LQ9H903 347 aaPredicted RBP10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PNPOQ9NVS9 261 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 AIG1Q9NVV5 245 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ASB6Q9NWX5 421 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TAS2R16Q9NYV7 291 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TMEM181Q9P2C4 612 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MGAT4BQ9UQ53 548 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 NOSIPQ9Y314 301 aaKnown RBP10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 FLVCR1Q9Y5Y0 555 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 GPR45Q9Y5Y3 372 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MALRD1Q5VYJ5 2156 aa10.77□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TMED7-TICAM2A0A0A6YYA0 188 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TMEM72A0PK05 275 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CCDC154A6NI56 674 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 AP3D1O14617 1153 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 RGS16O15492 202 aaPredicted RBP10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TLX2O43763 284 aaPredicted RBP10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CD5LO43866 347 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 IGHV3-9P01782 118 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PGRP06401 933 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TFPIP10646 304 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CD40P25942 277 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 S100A3P33764 101 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ACAA2P42765 397 aaKnown RBP10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CDKN2CP42773 168 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SLC1A3P43003 542 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 IRX1P78414 480 aaPredicted RBP10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 BST1Q10588 318 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 FAPQ12884 760 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 STX3Q13277 289 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 KRT71Q3SY84 523 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 C1QTNF12Q5T7M4 302 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 OR7E24Q6IFN5 339 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 HMGN2P46Q86SG4 172 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 LSRQ86X29 649 aaPredicted RBP10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SPATA3Q8NHX4 192 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 GTPBP3Q969Y2 492 aaKnown RBP10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 DHRS9Q9BPW9 319 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 INPP5KQ9BT40 448 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 FAIMQ9NVQ4 179 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 DCTN4Q9UJW0 460 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TMED7Q9Y3B3 224 aa10.76□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ZC3H12DA2A288 527 aaKnown RBP10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ELOA3DA6NLF2 546 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 EIF1BO60739 113 aaKnown RBP10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SNNO75324 88 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MRPL33O75394 65 aaKnown RBP10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 RAD51DO75771 328 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TACR3P29371 465 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 MAGEA8P43361 318 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 P2RY4P51582 365 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 POLR2HP52434 150 aaKnown RBP10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CDH11P55287 796 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SLC35A1P78382 337 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 DMTNQ08495 405 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SPOCK1Q08629 439 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 EPS8Q12929 822 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 NRF1Q16656 503 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ELOA3BQ3SY89 546 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 GPAT3Q53EU6 434 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 COX20Q5RI15 118 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 AGAP6Q5VW22 663 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 PAQR6Q6TCH4 344 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 TMEM108Q6UXF1 575 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 B3GLCTQ6Y288 498 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 CXXC5Q7LFL8 322 aaKnown RBP10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 SPATA19Q7Z5L4 167 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 HIPK1Q86Z02 1210 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 C1orf162Q8NEQ5 155 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 ELOA3Q8NG57 546 aa10.75□□□□□ -0.69
MSH5-SAPCD1-205ENST00000476085 OR52E4Q8NGH9 312 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms