RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TACR3P29371 465 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 MAGEA8P43361 318 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 PTH2RP49190 550 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 MRPL19P49406 292 aaKnown RBP12.46□□□□□ -0.42
UPF3A-204ENST00000475218 ADAM5Q6NVV9 412 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 GALNT5Q7Z7M9 940 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 CLIP4Q8N3C7 705 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 ZNF611Q8N823 705 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 AKAP1Q92667 903 aaKnown RBP eCLIP12.46□□□□□ -0.42
UPF3A-204ENST00000475218 PMM1Q92871 262 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 C7orf26Q96N11 449 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 POTEKPQ9BYX7 375 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 GSX2Q9BZM3 304 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 FANCFQ9NPI8 374 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 ZNF701Q9NV72 531 aaPredicted RBP12.46□□□□□ -0.42
UPF3A-204ENST00000475218 SLC25A37Q9NYZ2 338 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 NPAP1Q9NZP6 1156 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 P2RX2Q9UBL9 471 aa12.46□□□□□ -0.42
UPF3A-204ENST00000475218 FAM234BA2RU67 622 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 CFAP73A6NFT4 308 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 IGHV3-9P01782 118 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 BCHEP06276 602 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 PAX1P15863 534 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 SLC1A3P43003 542 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 CLK1P49759 484 aaKnown RBP12.45□□□□□ -0.42
UPF3A-204ENST00000475218 IDH3AP50213 366 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 POLR2HP52434 150 aaKnown RBP12.45□□□□□ -0.42
UPF3A-204ENST00000475218 DSTNP60981 165 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 CAPRIN1Q14444 709 aaKnown RBP12.45□□□□□ -0.42
UPF3A-204ENST00000475218 MIER2Q8N344 545 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 ZNF433Q8N7K0 673 aaPredicted RBP12.45□□□□□ -0.42
UPF3A-204ENST00000475218 OR52P1PQ8NH57 321 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 HSD17B8Q92506 261 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 TMEM19Q96HH6 336 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 ITCHQ96J02 903 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 Q96MF0 132 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 SLAMF8Q9P0V8 285 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 TMEM181Q9P2C4 612 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 TRAPPC4Q9Y296 219 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 PCDHB14Q9Y5E9 798 aa12.45□□□□□ -0.42
UPF3A-204ENST00000475218 SPIN1Q9Y657 262 aaPredicted RBP12.45□□□□□ -0.42
UPF3A-204ENST00000475218 FN1P02751 2386 aaKnown RBP12.44□□□□□ -0.42
UPF3A-204ENST00000475218 TRIM64A6NGJ6 449 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 TRIM64BA6NI03 449 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 ZNF208O43345 1280 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 DNPH1O43598 174 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 PGM3O95394 542 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 INHBBP09529 407 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 BMP2P12643 396 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 IL7RP16871 459 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 CRATP43155 626 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 ANXA11P50995 505 aaKnown RBP12.44□□□□□ -0.42
UPF3A-204ENST00000475218 PRSS57Q6UWY2 283 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 YTHDF3Q7Z739 585 aaKnown RBP12.44□□□□□ -0.42
UPF3A-204ENST00000475218 COMTD1Q86VU5 262 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 MAL2Q969L2 176 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 COX4I2Q96KJ9 171 aa12.44□□□□□ -0.42
UPF3A-204ENST00000475218 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.44□□□□□ -0.42
UPF3A-204ENST00000475218 ZNF443Q9Y2A4 671 aaPredicted RBP12.44□□□□□ -0.42
UPF3A-204ENST00000475218 PDLIM1O00151 329 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 SOD3P08294 240 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 DANCRP0C864 163 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 ADSLP30566 484 aaPredicted RBP12.43□□□□□ -0.42
UPF3A-204ENST00000475218 HTR3AP46098 478 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 OR2B6P58173 313 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 BSPH1Q075Z2 132 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 RGNQ15493 299 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 C6orf10Q5SRN2 563 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 RNF220Q5VTB9 566 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 FBXW9Q5XUX1 488 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 Q71RC1 249 aaPredicted RBP12.43□□□□□ -0.42
UPF3A-204ENST00000475218 BIVMQ86UB2 503 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 P3H2Q8IVL5 708 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 PEX5LQ8IYB4 626 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 ZIC4Q8N9L1 334 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 KBTBD8Q8NFY9 601 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 ATP6V1G3Q96LB4 118 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 NOSIPQ9Y314 301 aaKnown RBP12.43□□□□□ -0.42
UPF3A-204ENST00000475218 RNF115Q9Y4L5 304 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 TRBV5-3A0A0A0MS03 114 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 H7C1Q1 480 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 OVOL3O00110 214 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 ARHGEF9O43307 516 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 CNOT4O95628 575 aaKnown RBP12.43□□□□□ -0.42
UPF3A-204ENST00000475218 THBS1P07996 1170 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 ITGA5P08648 1049 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 FKBP2P26885 142 aaKnown RBP12.43□□□□□ -0.42
UPF3A-204ENST00000475218 P2RY4P51582 365 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 CRISP3P54108 245 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 BNIP2Q12982 314 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 SLC17A1Q14916 467 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 KRTAP21-3Q3LHN1 58 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 PAGE3Q5JUK9 113 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 BLOC1S3Q6QNY0 202 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 SERPINA11Q86U17 422 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 ZNF100Q8IYN0 542 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 PIGXQ8TBF5 258 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 TRIM2Q9C040 744 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 RMND5AQ9H871 391 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 TCF7L2Q9NQB0 619 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms