RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 TMEM30AQ9NV96 361 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 RUVBL1Q9Y265 456 aaKnown RBP3.92□□□□□ -1.78
VPS50-210ENST00000471188 SIRT4Q9Y6E7 314 aaPredicted RBP3.92□□□□□ -1.78
VPS50-210ENST00000471188 IGKV6-21A0A0C4DH24 114 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 CARNS1A5YM72 827 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 FAM221BA6H8Z2 402 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 MEIS3P1A6NDR6 274 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 GLTPD2A6NH11 291 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 OR5H14A6NHG9 310 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 CPSF4LA6NMK7 179 aaKnown RBP3.92□□□□□ -1.78
VPS50-210ENST00000471188 M0R3H8 397 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 CCSO14618 274 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 PHOX2AO14813 284 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 KCNAB3O43448 404 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 ADAMTS4O75173 837 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 PCDH8O95206 1070 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 PEX11BO96011 259 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 IFNA17P01571 189 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 ARG1P05089 322 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 HEXAP06865 529 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 HCKP08631 526 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 MRPL3P09001 348 aaKnown RBP3.92□□□□□ -1.78
VPS50-210ENST00000471188 SFTA3P0C7M3 94 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 C1GALT1C1LP0DN25 315 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 VSIG10L2P0DP72 767 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 ZNF25P17030 456 aaPredicted RBP3.92□□□□□ -1.78
VPS50-210ENST00000471188 CD53P19397 219 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 NME2P22392 152 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 PAX6P26367 422 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 CD80P33681 288 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 FAUP35544 74 aaKnown RBP3.92□□□□□ -1.78
VPS50-210ENST00000471188 MNDAP41218 407 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 TSPAN7P41732 249 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 SMIM11AP58511 58 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 STARD6P59095 220 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 MRPS10P82664 201 aaKnown RBP3.92□□□□□ -1.78
VPS50-210ENST00000471188 ZNF630Q2M218 657 aaPredicted RBP3.92□□□□□ -1.78
VPS50-210ENST00000471188 TIGD5Q53EQ6 642 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 OLFML2AQ68BL7 652 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 RPTNQ6XPR3 784 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 NDUFAF7Q7L592 441 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 CMTM4Q8IZR5 234 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 CARFQ8N187 725 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 ACBD7Q8N6N7 88 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 REPS2Q8NFH8 660 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 BBS1Q8NFJ9 593 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 OR2L5Q8NG80 312 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 OR52N2Q8NGI0 321 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 OR2G2Q8NGZ5 317 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 OR8S1Q8NH09 359 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 ABHD4Q8TB40 342 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 FUBP3Q96I24 572 aaKnown RBP eCLIP3.92□□□□□ -1.78
VPS50-210ENST00000471188 HS6ST2Q96MM7 605 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 DERL3Q96Q80 235 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 F2RL3Q96RI0 385 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 NEU1Q99519 415 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 ACBD6Q9BR61 282 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 ZNF559Q9BR84 538 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 SMG9Q9H0W8 520 aaKnown RBP3.92□□□□□ -1.78
VPS50-210ENST00000471188 OPN3Q9H1Y3 402 aaPredicted RBP3.92□□□□□ -1.78
VPS50-210ENST00000471188 SMOC1Q9H4F8 434 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 FN3KRPQ9HA64 309 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 ACKR4Q9NPB9 350 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 GPATCH2Q9NW75 528 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 CNIH4Q9P003 139 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 PIM2Q9P1W9 311 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 DNAJB11Q9UBS4 358 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 MOKQ9UQ07 419 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 CARHSP1Q9Y2V2 147 aaKnown RBP3.92□□□□□ -1.78
VPS50-210ENST00000471188 KCNIP3Q9Y2W7 256 aa3.92□□□□□ -1.78
VPS50-210ENST00000471188 A0A1W2PNR3 127 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 C1orf226A1L170 272 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 ZC3H12DA2A288 527 aaKnown RBP3.91□□□□□ -1.78
VPS50-210ENST00000471188 C9orf170A2RU37 121 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 ANTXRLA6NF34 631 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 SULT2B1O00204 365 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 SAP18O00422 153 aaKnown RBP3.91□□□□□ -1.78
VPS50-210ENST00000471188 SOCS6O14544 535 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 BCL2L11O43521 198 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 BNIP3LO60238 219 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 IL5P05113 134 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 THBS1P07996 1170 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 SNRPCP09234 159 aaKnown RBP3.91□□□□□ -1.78
VPS50-210ENST00000471188 LIPCP11150 499 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 SPTBP11277 2137 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 ACP5P13686 325 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 RAB5AP20339 215 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 TBXA2RP21731 343 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 PYCR1P32322 319 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 PNPLA4P41247 253 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 RBM34P42696 430 aaKnown RBP3.91□□□□□ -1.78
VPS50-210ENST00000471188 DOC2AQ14183 400 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 PCGF3Q3KNV8 242 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 UBXN11Q5T124 520 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 KHDRBS2Q5VWX1 349 aaKnown RBP3.91□□□□□ -1.78
VPS50-210ENST00000471188 REEP3Q6NUK4 255 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 FCRLAQ7L513 359 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 PRSS58Q8IYP2 241 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 GPC2Q8N158 579 aa3.91□□□□□ -1.78
VPS50-210ENST00000471188 FAM98AQ8NCA5 519 aaKnown RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms