RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 SERPINB7O75635 380 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 ANGPTL1O95841 491 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 LGI1O95970 557 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 DBIP07108 87 aaKnown RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 NGFRP08138 427 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 GKN3PP0CG01 181 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 PRKAR1BP31321 381 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 KRT20P35900 424 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 CASP3P42574 277 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 CYB561P49447 251 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 TMED10P49755 219 aaKnown RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 HLCSP50747 726 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 ZNF136P52737 540 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 TMPRSS3P57727 454 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 CXADRP78310 365 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 OC90Q02509 493 aaPredicted RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 MFAP5Q13361 173 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 TOP3AQ13472 1001 aaPredicted RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 TBR1Q16650 682 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 RNF220Q5VTB9 566 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 AGAP7PQ5VUJ5 663 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 OR5M10Q6IEU7 315 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 DHRS4L2Q6PKH6 230 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 IGFL2Q6UWQ7 119 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 NUP54Q7Z3B4 507 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 KRT73Q86Y46 540 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 EID3Q8N140 333 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 CYP4Z2PQ8N1L4 340 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 FAM71CQ8NEG0 241 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 OR6T1Q8NGN1 323 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 HAS2Q92819 552 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 PYURFQ96I23 114 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 LRGUKQ96M69 825 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 AGAP4Q96P64 663 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 ZNF607Q96SK3 696 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 DOHHQ9BU89 302 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 PINK1Q9BXM7 581 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 AMBRA1Q9C0C7 1298 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 HPF1Q9NWY4 346 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 LRFN1Q9P244 771 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 TEKT2Q9UIF3 430 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 MRTO4Q9UKD2 239 aaKnown RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 ABCG2Q9UNQ0 655 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 CARD8Q9Y2G2 431 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 NTNG1Q9Y2I2 539 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 DTNAQ9Y4J8 743 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 IGF2RP11717 2491 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 URB1O60287 2271 aaKnown RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 MED13Q9UHV7 2174 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 A0A1W2PQD3 144 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 SH3D21A4FU49 640 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 OR5H15A6NDH6 313 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 hCG_2039718K7EN88 272 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 DLGAP1O14490 977 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 AP3D1O14617 1153 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 FFAR1O14842 300 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 GMFGO60234 142 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 GMNNO75496 209 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 PDE9AO76083 593 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 DIRAS1O95057 198 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 NTN1O95631 604 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 CLIC3O95833 236 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 CSTAP01040 98 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 THY1P04216 161 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 HPGDP15428 266 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 ZNF26P17031 533 aaPredicted RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 MST1P26927 711 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 SLC7A1P30825 629 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 LCN1P31025 176 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 GNALP38405 381 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 ACAA2P42765 397 aaKnown RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 MAGEA2P43356 314 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 YAP1P46937 504 aaKnown RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 DNASE1L1P49184 302 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 PSPHP78330 225 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 ZNF117Q03924 483 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 SKP2Q13309 424 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 EFR3AQ14156 821 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 LARS2Q15031 903 aaKnown RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 OR1C1Q15619 314 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 TOMM34Q15785 309 aaPredicted RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 LINC00303Q3SY05 128 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 LIN52Q52LA3 116 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 SLC22A10Q63ZE4 541 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 TMEM81Q6P7N7 255 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 BORAQ6PGQ7 559 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 TBPL2Q6SJ96 375 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 GRAMD2AQ8IUY3 354 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 HS3ST5Q8IZT8 346 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 WDSUB1Q8N9V3 476 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 PAPD5Q8NDF8 572 aaKnown RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 PSD4Q8NDX1 1056 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 MDS2Q8NDY4 140 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 VANGL1Q8TAA9 524 aaPredicted RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 DUSP19Q8WTR2 217 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 PHF10Q8WUB8 498 aaKnown RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 TMCO6Q96DC7 493 aa4.29□□□□□ -1.72
SF3B1-208ENST00000470268 DUS3LQ96G46 650 aaKnown RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 SH3YL1Q96HL8 342 aaPredicted RBP4.29□□□□□ -1.72
SF3B1-208ENST00000470268 SGCZQ96LD1 299 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms