RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 CLDN15P56746 228 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 CLDN20P56880 219 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 TLE1Q04724 770 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 EGR4Q05215 589 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 PDSS1Q5T2R2 415 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 OR2T5Q6IEZ7 315 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 TTC33Q6PID6 262 aaPredicted RBP13.66□□□□□ -0.22
NPHP4-205ENST00000466897 POMZP3Q6PJE2 187 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 RNF113BQ8IZP6 322 aaKnown RBP13.66□□□□□ -0.22
NPHP4-205ENST00000466897 OR2T29Q8NH02 315 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 ACOT11Q8WXI4 607 aaPredicted RBP13.66□□□□□ -0.22
NPHP4-205ENST00000466897 UCN2Q96RP3 112 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 EPYCQ99645 322 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 FUZQ9BT04 418 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 TRAPPC4Q9Y296 219 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 AP4S1Q9Y587 144 aa13.66□□□□□ -0.22
NPHP4-205ENST00000466897 SMG1Q96Q15 3661 aaKnown RBP13.66□□□□□ -0.22
NPHP4-205ENST00000466897 A0A0J9YW62 118 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 FIGNL2A6NMB9 653 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 HNRNPRO43390 633 aaKnown RBP13.65□□□□□ -0.22
NPHP4-205ENST00000466897 OR2T1O43869 369 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 SLC19A2O60779 497 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 DIRAS1O95057 198 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 GADD45GO95257 159 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 MT-ND1P03886 318 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 ABOP16442 354 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 SHC1P29353 583 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 RRM2P31350 389 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 SFTPDP35247 375 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 LIMS1P48059 325 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 SUCLG1P53597 346 aaKnown RBP13.65□□□□□ -0.22
NPHP4-205ENST00000466897 RPS3AP61247 264 aaKnown RBP13.65□□□□□ -0.22
NPHP4-205ENST00000466897 SPIBQ01892 262 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 TMEM176BQ3YBM2 270 aaPredicted RBP13.65□□□□□ -0.22
NPHP4-205ENST00000466897 C1orf140Q5VVS0 124 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 TMPPEQ6ZT21 453 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 ZNF771Q7L3S4 317 aaPredicted RBP13.65□□□□□ -0.22
NPHP4-205ENST00000466897 ADGRE4PQ86SQ3 457 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 NKAIN4Q8IVV8 208 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 OR2V1Q8NHB1 315 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 SLC7A13Q8TCU3 470 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 TMEM239Q8WW34 195 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 SMPDL3BQ92485 455 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 PTDSS2Q9BVG9 487 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 TMEM185BQ9H7F4 350 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 COQ10BQ9H8M1 238 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 TIGARQ9NQ88 270 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 RHCGQ9UBD6 479 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 LYVE1Q9Y5Y7 322 aa13.65□□□□□ -0.22
NPHP4-205ENST00000466897 TRAV36DV7A0A075B6V5 113 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 ZC3H12DA2A288 527 aaKnown RBP13.64□□□□□ -0.23
NPHP4-205ENST00000466897 ANKRD65E5RJM6 399 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 H0Y3Z8 333 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 EIF1AYO14602 144 aaKnown RBP13.64□□□□□ -0.23
NPHP4-205ENST00000466897 PRRG2O14669 202 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 DEAF1O75398 565 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-205ENST00000466897 AHSA1O95433 338 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 CST1P01037 141 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 CCNA2P20248 432 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 IDUAP35475 653 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 ERFP50548 548 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 RAC3P60763 192 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 CSNK2A1P68400 391 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-205ENST00000466897 C19orf57Q0VDD7 668 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 MYBPHQ13203 477 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 MFSD13AQ14CX5 517 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 GXYLT1Q4G148 440 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 EMC4Q5J8M3 183 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 FAM69AQ5T7M9 428 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 PRICKLE2Q7Z3G6 844 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 LINC00471Q8N535 108 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 OR10D3Q8NH80 312 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 MFSD8Q8NHS3 518 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 RNF217Q8TC41 542 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 TMEM255BQ8WV15 326 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 CPNE4Q96A23 557 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-205ENST00000466897 ARL5BQ96KC2 179 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 OR5B2Q96R09 309 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 KLHL4Q9C0H6 718 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 OR11A1Q9GZK7 315 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 TP63Q9H3D4 680 aaPredicted RBP13.64□□□□□ -0.23
NPHP4-205ENST00000466897 PNPLA3Q9NST1 481 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 DNAJB9Q9UBS3 223 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 CAMK2AQ9UQM7 478 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 MED31Q9Y3C7 131 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 TESMINQ9Y4I5 508 aa13.64□□□□□ -0.23
NPHP4-205ENST00000466897 DOCK7Q96N67 2140 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 A0A087WUU8 490 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 FTCDNL1E5RQL4 147 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 TNFSF11O14788 317 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 SEC14L5O43304 696 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 ENTPD5O75356 428 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 MT-ATP6P00846 226 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 TPOP07202 933 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 TFPIP10646 304 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 FUT4P22083 530 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 DIO1P49895 249 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 UGT2B15P54855 530 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 CTBP2P56545 445 aa13.63□□□□□ -0.23
NPHP4-205ENST00000466897 SLC35A1P78382 337 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms