RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TMED7Q9Y3B3 224 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 RAP2CQ9Y3L5 183 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 SLC25A15Q9Y619 301 aa12.77□□□□□ -0.37
SDC1-204ENST00000429035 V9GYY5 206 aaPredicted RBP12.77□□□□□ -0.37
SDC1-204ENST00000429035 TMEM72A0PK05 275 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 FAM234BA2RU67 622 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 C1QCP02747 245 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 ITGA5P08648 1049 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 LBPP18428 481 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 CDH2P19022 906 aaPredicted RBP12.76□□□□□ -0.37
SDC1-204ENST00000429035 BGNP21810 368 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 TTKP33981 857 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 SLC1A6P48664 564 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 POLR2HP52434 150 aaKnown RBP12.76□□□□□ -0.37
SDC1-204ENST00000429035 PHC1P78364 1004 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 RAB35Q15286 201 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 SYPL1Q16563 259 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 DPY19L1Q2PZI1 675 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 KLHL24Q6TFL4 600 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 ZNF525Q8N782 197 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 AENQ8WTP8 325 aaKnown RBP12.76□□□□□ -0.37
SDC1-204ENST00000429035 TESCQ96BS2 214 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 ZG16BQ96DA0 208 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 PAIP2Q9BPZ3 127 aaKnown RBP12.76□□□□□ -0.37
SDC1-204ENST00000429035 NAA11Q9BSU3 229 aaPredicted RBP12.76□□□□□ -0.37
SDC1-204ENST00000429035 MANSC1Q9H8J5 431 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 EXOSC3Q9NQT5 275 aaKnown RBP12.76□□□□□ -0.37
SDC1-204ENST00000429035 TMEM181Q9P2C4 612 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 MALT1Q9UDY8 824 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 SLC9A8Q9Y2E8 581 aa12.76□□□□□ -0.37
SDC1-204ENST00000429035 A8MV72 311 aaPredicted RBP12.75□□□□□ -0.37
SDC1-204ENST00000429035 HMGN4O00479 90 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 DNPH1O43598 174 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 GPRIN2O60269 458 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 SCN2BO60939 215 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 IFNA2P01563 188 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 CHRM4P08173 479 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 NR2F1P10589 423 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 UQCRBP14927 111 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 TACR3P29371 465 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 RPL14P50914 215 aaKnown RBP12.75□□□□□ -0.37
SDC1-204ENST00000429035 ANXA11P50995 505 aaKnown RBP12.75□□□□□ -0.37
SDC1-204ENST00000429035 SLC35A1P78382 337 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 PLAURQ03405 335 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 CASP8Q14790 479 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 CHRFAM7AQ494W8 412 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 MRPL2Q5T653 305 aaKnown RBP12.75□□□□□ -0.37
SDC1-204ENST00000429035 OR7E24Q6IFN5 339 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 C11orf71Q6IPW1 123 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 PODNL1Q6PEZ8 512 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 ADGRG3Q86Y34 549 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 TRIML2Q8N7C3 387 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 OIT3Q8WWZ8 545 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 PANX1Q96RD7 426 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 C20orf27Q9GZN8 174 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 SAP130Q9H0E3 1048 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 KCNK9Q9NPC2 374 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 OSGIN1Q9UJX0 560 aa12.75□□□□□ -0.37
SDC1-204ENST00000429035 YLPM1P49750 1951 aaKnown RBP12.74□□□□□ -0.37
SDC1-204ENST00000429035 ZC3H12DA2A288 527 aaKnown RBP12.74□□□□□ -0.37
SDC1-204ENST00000429035 PRAMEF27A3QJZ7 478 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 GSNP06396 782 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 IMPDH2P12268 514 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 IL7RP16871 459 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 NTF4P34130 210 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 CDKN2CP42773 168 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 HTR3AP46098 478 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 SLC16A1P53985 500 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 UFM1P61960 85 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 GNA13Q14344 377 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 OR7A5Q15622 319 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 GABRA6Q16445 453 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 OTUD3Q5T2D3 398 aaPredicted RBP12.74□□□□□ -0.37
SDC1-204ENST00000429035 C6orf52Q5T4I8 152 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 TSPO2Q5TGU0 170 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 DNM1P46Q6ZS02 220 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 ZNF621Q6ZSS3 439 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 SPATA3Q8NHX4 192 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 SORT1Q99523 831 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 ZBTB18Q99592 522 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 INPP5KQ9BT40 448 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 GRIP2Q9C0E4 1043 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 SLC38A1Q9H2H9 487 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 FKRPQ9H9S5 495 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 SLC7A10Q9NS82 523 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 PNPOQ9NVS9 261 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 AMDHD2Q9Y303 409 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 FLVCR1Q9Y5Y0 555 aa12.74□□□□□ -0.37
SDC1-204ENST00000429035 ATRQ13535 2644 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 GOLGA8QA0A0J9YX86 632 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 GOLGA8OA6NCC3 632 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 CCDC154A6NI56 674 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 ATP6V1G2-DDX39BF2Z307 99 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 GOLGA8NF8WBI6 632 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 BIRC5O15392 142 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 EIF1BO60739 113 aaKnown RBP12.73□□□□□ -0.37
SDC1-204ENST00000429035 KRT33AO76009 404 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 THBS1P07996 1170 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 GUSBP08236 651 aa12.73□□□□□ -0.37
SDC1-204ENST00000429035 ALDOCP09972 364 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms