RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ZNF208O43345 1280 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 PLAUP00749 431 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 HTR3AP46098 478 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 OR2B6P58173 313 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 H3F3AP84243 136 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 SF3A3Q12874 501 aaKnown RBP eCLIP16.88■□□□□ 0.29
SF3A1-202ENST00000411423 ADRM1Q16186 407 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 GLIPR1L2Q4G1C9 344 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 ZNF311Q5JNZ3 666 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 SFRP5Q5T4F7 317 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 GCNT6Q5T4J0 391 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 SEZ6L2Q6UXD5 910 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 ATG4DQ86TL0 474 aaPredicted RBP16.88■□□□□ 0.29
SF3A1-202ENST00000411423 CADM2Q8N3J6 435 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 BBS10Q8TAM1 723 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 TMEM45AQ9NWC5 275 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 THUMPD1Q9NXG2 353 aaKnown RBP16.88■□□□□ 0.29
SF3A1-202ENST00000411423 TMEM181Q9P2C4 612 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 A0A0G2JND7 137 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 TPST1O60507 370 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 GPX2P18283 190 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 FPR1P21462 350 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 CLK1P49759 484 aaKnown RBP16.87■□□□□ 0.29
SF3A1-202ENST00000411423 KEAP1Q14145 624 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 LARS2Q15031 903 aaKnown RBP16.87■□□□□ 0.29
SF3A1-202ENST00000411423 DEFB113Q30KQ7 82 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 RUNDC3AQ59EK9 446 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 PRAMEF8Q5VWM4 474 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 PRAMEF7Q5VXH5 474 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 WFDC8Q8IUA0 241 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 KRTAP1-3Q8IUG1 177 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 ZNF440Q8IYI8 595 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 C3orf49Q96BT1 292 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 WFDC6Q9BQY6 131 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 TACO1Q9BSH4 297 aaKnown RBP16.87■□□□□ 0.29
SF3A1-202ENST00000411423 OR10A4Q9H209 315 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 RAD21L1Q9H4I0 556 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 TRAPPC4Q9Y296 219 aa16.87■□□□□ 0.29
SF3A1-202ENST00000411423 IGHV3-9P01782 118 aa16.86■□□□□ 0.29
SF3A1-202ENST00000411423 PPP3CBP16298 524 aa16.86■□□□□ 0.29
SF3A1-202ENST00000411423 IGHV1-2P23083 117 aa16.86■□□□□ 0.29
SF3A1-202ENST00000411423 FOXG1P55316 489 aaPredicted RBP16.86■□□□□ 0.29
SF3A1-202ENST00000411423 CDK6Q00534 326 aa16.86■□□□□ 0.29
SF3A1-202ENST00000411423 PDK3Q15120 406 aa16.86■□□□□ 0.29
SF3A1-202ENST00000411423 Q6ZT83 130 aa16.86■□□□□ 0.29
SF3A1-202ENST00000411423 DDIT4LQ96D03 193 aa16.86■□□□□ 0.29
SF3A1-202ENST00000411423 ALPK1Q96QP1 1244 aa16.86■□□□□ 0.29
SF3A1-202ENST00000411423 PRR14Q9BWN1 585 aa16.86■□□□□ 0.29
SF3A1-202ENST00000411423 TMEM120AQ9BXJ8 343 aa16.86■□□□□ 0.29
SF3A1-202ENST00000411423 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.86■□□□□ 0.29
SF3A1-202ENST00000411423 IFT52Q9Y366 437 aa16.86■□□□□ 0.29
SF3A1-202ENST00000411423 TMEM229AB2RXF0 380 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 LYZL6O75951 148 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 HTR2AP28223 471 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 ADSLP30566 484 aaPredicted RBP16.85■□□□□ 0.29
SF3A1-202ENST00000411423 SLC16A1P53985 500 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 IRX1P78414 480 aaPredicted RBP16.85■□□□□ 0.29
SF3A1-202ENST00000411423 CEACAM7Q14002 265 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 TAB1Q15750 504 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 WBP2NLQ6ICG8 309 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 ALKBH2Q6NS38 261 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 GALNT5Q7Z7M9 940 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 DHDDSQ86SQ9 333 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 PTOV1Q86YD1 416 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 STEAP2Q8NFT2 490 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 PLPPR2Q96GM1 343 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 TMEM38AQ9H6F2 299 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 UBTD1Q9HAC8 227 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 LEF1Q9UJU2 399 aaPredicted RBP16.85■□□□□ 0.29
SF3A1-202ENST00000411423 ZNF232Q9UNY5 417 aa16.85■□□□□ 0.29
SF3A1-202ENST00000411423 TMEM247A6NEH6 219 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 LIPT2A6NK58 231 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 FBP2O00757 339 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 DNPH1O43598 174 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 NPIPB7O75200 414 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 ETS2P15036 469 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 COX5AP20674 150 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 FKBP2P26885 142 aaKnown RBP16.84■□□□□ 0.29
SF3A1-202ENST00000411423 P2RY4P51582 365 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 MTPNP58546 118 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 ITGADQ13349 1161 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 SCARB2Q14108 478 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 BEX5Q5H9J7 111 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 REEP3Q6NUK4 255 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 BHLHA15Q7RTS1 189 aaPredicted RBP16.84■□□□□ 0.29
SF3A1-202ENST00000411423 DPP10Q8N608 796 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 TMEM99Q8N816 258 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 PIGXQ8TBF5 258 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 KISS1RQ969F8 398 aaPredicted RBP16.84■□□□□ 0.29
SF3A1-202ENST00000411423 ZHX1-C8orf76Q96EF9 292 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 ANKRD27Q96NW4 1050 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 TMEM204Q9BSN7 226 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 TMUB1Q9BVT8 246 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 POTEKPQ9BYX7 375 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 RABEP2Q9H5N1 569 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 FGFR1OP2Q9NVK5 253 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 NOSIPQ9Y314 301 aaKnown RBP16.84■□□□□ 0.29
SF3A1-202ENST00000411423 NDUFAF1Q9Y375 327 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 FLVCR1Q9Y5Y0 555 aa16.84■□□□□ 0.29
SF3A1-202ENST00000411423 ITPR3Q14573 2671 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms