RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 NLRC3Q7RTR2 1065 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 OR5L2Q8NGL0 311 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 OR51A7Q8NH64 312 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 CCDC74AQ96AQ1 378 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 SLC35D1Q9NTN3 355 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 PDGFBP01127 241 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-206ENST00000409809 AGBL4Q5VU57 503 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 EDAQ92838 391 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 NDUFB11Q9NX14 153 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 SCN11AQ9UI33 1791 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 ADAM29Q9UKF5 820 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 CCL22O00626 93 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 COL19A1Q14993 1142 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 DCAF4L2Q8NA75 395 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 OR13C4Q8NGS5 318 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 WDR20Q8TBZ3 569 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF689Q96CS4 500 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-206ENST00000409809 ARSGQ96EG1 525 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 CCDC74BQ96LY2 380 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 POFUT1Q9H488 388 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 KCNE1P15382 129 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 PCBD1P61457 104 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 Q499Y3 187 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 GRINAQ7Z429 371 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 TFGQ92734 400 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-206ENST00000409809 C1orf198Q9H425 327 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 KCTD3Q9Y597 815 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 C4AP0C0L4 1744 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 C4BP0C0L5 1744 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 HOXA1P49639 335 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-206ENST00000409809 UGCGQ16739 394 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 OR2T2Q6IF00 324 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 LEG1Q6P5S2 330 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 IGDCC3Q8IVU1 814 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 UBAC2Q8NBM4 344 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 SLC22A12Q96S37 553 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 A0A1W2PPK0 400 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 G3V3Q6 166 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 CSF2RAP15509 400 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 ADRA2CP18825 462 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 FUT10Q6P4F1 479 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 C4orf36Q96KX1 117 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 LOC100289279A0A1B0GTE1 492 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 SIX6O95475 246 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 MRPL19P49406 292 aaKnown RBP12.09□□□□□ -0.47
COL6A3-206ENST00000409809 GZMKP49863 264 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 PKIAP61925 76 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 OR4D6Q8NGJ1 314 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 RAB7BQ96AH8 199 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 TMEM19Q96HH6 336 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 CDCA4Q9BXL8 241 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 CCDC163A0A0D9SF12 145 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 SYNGR4O95473 234 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 ABHD16AO95870 558 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 FUT4P22083 530 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 VRK3Q8IV63 474 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 SIAH3Q8IW03 269 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 ARHGDIGQ99819 225 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 HCAR1Q9BXC0 346 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 ARV1Q9H2C2 271 aa12.09□□□□□ -0.47
COL6A3-206ENST00000409809 A0A0B4J2A0 478 aa12.08□□□□□ -0.47
COL6A3-206ENST00000409809 XKRY2A2RUG3 117 aa12.08□□□□□ -0.47
COL6A3-206ENST00000409809 TRABD2BA6NFA1 517 aa12.08□□□□□ -0.47
COL6A3-206ENST00000409809 HIDE1A8MVS5 230 aa12.08□□□□□ -0.47
COL6A3-206ENST00000409809 ACSM4P0C7M7 580 aa12.08□□□□□ -0.47
COL6A3-206ENST00000409809 SERTAD2Q14140 314 aa12.08□□□□□ -0.47
COL6A3-206ENST00000409809 OR2L13Q8N349 312 aa12.08□□□□□ -0.47
COL6A3-206ENST00000409809 OR13C8Q8NGS7 320 aa12.08□□□□□ -0.47
COL6A3-206ENST00000409809 OR9A2Q8NGT5 310 aa12.08□□□□□ -0.47
COL6A3-206ENST00000409809 TOMM40LQ969M1 308 aa12.08□□□□□ -0.47
COL6A3-206ENST00000409809 CPNE4Q96A23 557 aaPredicted RBP12.08□□□□□ -0.47
COL6A3-206ENST00000409809 SHPKQ9UHJ6 478 aa12.08□□□□□ -0.47
COL6A3-206ENST00000409809 GRXCR1A8MXD5 290 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 CTDSP2O14595 271 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 TMEM225BP0DP42 221 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 GNSP15586 552 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 GPX3P22352 226 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 DHPSP49366 369 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-206ENST00000409809 ZNF280AP59817 542 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-206ENST00000409809 COX19Q49B96 90 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 CNTN4Q8IWV2 1026 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 PQLC3Q8N755 202 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 INPP5KQ9BT40 448 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 TLR9Q9NR96 1032 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 CUTCQ9NTM9 273 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 SLC27A5Q9Y2P5 690 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 OR5K4A6NMS3 321 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 ZNF207O43670 478 aaKnown RBP12.08□□□□□ -0.48
COL6A3-206ENST00000409809 SNRNP200O75643 2136 aaKnown RBP12.08□□□□□ -0.48
COL6A3-206ENST00000409809 CST3P01034 146 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-206ENST00000409809 ZNF26P17031 533 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-206ENST00000409809 C21orf33P30042 268 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-206ENST00000409809 RAB28P51157 221 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 SH3BP2P78314 561 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 KCTD11Q693B1 232 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 FAM160A2Q8N612 972 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-206ENST00000409809 SLC35B4Q969S0 331 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 TVP23CQ96ET8 276 aa12.08□□□□□ -0.48
COL6A3-206ENST00000409809 JSRP1Q96MG2 331 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-206ENST00000409809 NDRG2Q9UN36 371 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms