RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TTC9Q92623 222 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 HGDQ93099 445 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 ZG16BQ96DA0 208 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 TMCO6Q96DC7 493 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 LGALS12Q96DT0 336 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 SIGLEC12Q96PQ1 595 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 ZNF350Q9GZX5 532 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 SAP130Q9H0E3 1048 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.24□□□□□ -0.45
LIMS1-204ENST00000409441 QRSL1Q9H0R6 528 aaKnown RBP12.24□□□□□ -0.45
LIMS1-204ENST00000409441 AMBNQ9NP70 447 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 POLE3Q9NRF9 147 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 SELENONQ9NZV5 590 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 RPL36Q9Y3U8 105 aaKnown RBP12.24□□□□□ -0.45
LIMS1-204ENST00000409441 PCDHGB7Q9Y5F8 929 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 A0A087WUU8 490 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 EFCAB9A8MZ26 197 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 M0R129 80 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 ENTPD6O75354 484 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 UTS2O95399 124 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 RPS4Y1P22090 263 aaKnown RBP12.23□□□□□ -0.45
LIMS1-204ENST00000409441 LCN1P31025 176 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 BMXP51813 675 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 SMSP52788 366 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 CDK5Q00535 292 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.23□□□□□ -0.452e-6■□□□□ 11.2
LIMS1-204ENST00000409441 FOXD4Q12950 439 aaPredicted RBP12.23□□□□□ -0.45
LIMS1-204ENST00000409441 TSPAN31Q12999 210 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 ZNF846Q147U1 533 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 FLYWCH1Q4VC44 716 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 ZNF619Q8N2I2 560 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 FAM26EQ8N5C1 309 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 PIGXQ8TBF5 258 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 S100ZQ8WXG8 99 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 PRRG3Q9BZD7 231 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 HOXD1Q9GZZ0 328 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 SH2D2AQ9NP31 389 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 UBQLN4Q9NRR5 601 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 FLRT3Q9NZU0 649 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.23□□□□□ -0.45
LIMS1-204ENST00000409441 B3GNT3Q9Y2A9 372 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 CHST2Q9Y4C5 530 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 CHCHD2Q9Y6H1 151 aaPredicted RBP12.23□□□□□ -0.45
LIMS1-204ENST00000409441 PKD1L2Q7Z442 2459 aa12.23□□□□□ -0.45
LIMS1-204ENST00000409441 NPIPA5A0A0B4J1W7 369 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 NPIPA7E9PJI5 369 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 ICOSLGO75144 302 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 DBIP07108 87 aaKnown RBP12.22□□□□□ -0.45
LIMS1-204ENST00000409441 NPIPA8P0DM63 369 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 TBXA2RP21731 343 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 LIPAP38571 399 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 GIPRP48546 466 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 PCYT1AP49585 367 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 TNFSF10P50591 281 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 VBP1P61758 197 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 RASSF6Q6ZTQ3 369 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 ASB18Q6ZVZ8 466 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 PLEKHM3Q6ZWE6 761 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 NDNFQ8TB73 568 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 PAQR8Q8TEZ7 354 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 ACOT11Q8WXI4 607 aaPredicted RBP12.22□□□□□ -0.45
LIMS1-204ENST00000409441 IL4I1Q96RQ9 567 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 SECISBP2Q96T21 854 aaKnown RBP12.22□□□□□ -0.45
LIMS1-204ENST00000409441 MCHR1Q99705 422 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 WDR12Q9GZL7 423 aaKnown RBP12.22□□□□□ -0.45
LIMS1-204ENST00000409441 KRCC1Q9NPI7 259 aaPredicted RBP12.22□□□□□ -0.45
LIMS1-204ENST00000409441 ZNF71Q9NQZ8 489 aaPredicted RBP12.22□□□□□ -0.45
LIMS1-204ENST00000409441 CNIH4Q9P003 139 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 TUBD1Q9UJT1 453 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 TP53TG5Q9Y2B4 290 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 CSAG2Q9Y5P2 127 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 CNTRLQ7Z7A1 2325 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 IRGMA1A4Y4 181 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 AGAP5A6NIR3 686 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 CPSF4LA6NMK7 179 aaKnown RBP12.22□□□□□ -0.45
LIMS1-204ENST00000409441 NPIPB9F8W1W9 429 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 AIREO43918 545 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 FADS1O60427 444 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 TPST2O60704 377 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 SLC25A12O75746 678 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 PTHP01270 115 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 IGFBP1P08833 259 aaPredicted RBP12.22□□□□□ -0.45
LIMS1-204ENST00000409441 CCL3P10147 92 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 HPGDP15428 266 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 CD46P15529 392 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 CASP3P42574 277 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 CD97P48960 835 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 CLK1P49759 484 aaKnown RBP12.22□□□□□ -0.45
LIMS1-204ENST00000409441 ATP12AP54707 1039 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 NCS1P62166 190 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 EEF1A1P68104 462 aaKnown RBP12.22□□□□□ -0.45
LIMS1-204ENST00000409441 GINS1Q14691 196 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 ARMCX4Q5H9R4 360 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 SLC25A25Q6KCM7 469 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 ZNF730Q6ZMV8 503 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 ZNF836Q6ZNA1 936 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 RRM2BQ7LG56 351 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 HMGN2P46Q86SG4 172 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 ADCK1Q86TW2 530 aa12.22□□□□□ -0.45
LIMS1-204ENST00000409441 RANBP3LQ86VV4 465 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms