RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 PHOX2BQ99453 314 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 C1QTNF2Q9BXJ5 285 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 RGCCQ9H4X1 137 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 C17orf113A0A1B0GUU1 675 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 CEBPZOSA8MTT3 80 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 MARVELD2Q8N4S9 558 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 EPHX3Q9H6B9 360 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 A0A1W2PQL4 384 aaPredicted RBP10.56□□□□□ -0.72
TTC28-201ENST00000397906 FGF4P08620 206 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 PRSS3P35030 304 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 ATP1B3P54709 279 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 TPRA1Q86W33 373 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 OR1E3Q8WZA6 343 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 MAELQ96JY0 434 aaKnown RBP10.56□□□□□ -0.72
TTC28-201ENST00000397906 ARL6Q9H0F7 186 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 PRDM9Q9NQV7 894 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 MAB21L2Q9Y586 359 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 CD300LBA8K4G0 201 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 HEXAP06865 529 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 APEHP13798 732 aaKnown RBP10.56□□□□□ -0.72
TTC28-201ENST00000397906 SLX4IPQ5VYV7 408 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 CD163Q86VB7 1156 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 DMBX1Q8NFW5 382 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 SDR39U1Q9NRG7 319 aaPredicted RBP10.56□□□□□ -0.72
TTC28-201ENST00000397906 TBC1D29Q9UFV1 150 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 ALS2Q96Q42 1657 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 OR52W1Q6IF63 320 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 LCN10Q6JVE6 187 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 CLMPQ9H6B4 373 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 ELOVL3Q9HB03 270 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 ACKR4Q9NPB9 350 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 AGPAT4Q9NRZ5 378 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 LOXL2Q9Y4K0 774 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 TRBV4-1A0A0J9YWV2 114 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 ZNF593O00488 134 aaPredicted RBP10.56□□□□□ -0.72
TTC28-201ENST00000397906 IFNA1P01562 189 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 ALDOBP05062 364 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 GRPP07492 148 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 SPEM2Q0P670 501 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 B3GNT9Q6UX72 402 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 OR56B2PQ8NGI1 322 aa10.56□□□□□ -0.72
TTC28-201ENST00000397906 TESQ9UGI8 421 aaKnown RBP10.56□□□□□ -0.72
TTC28-201ENST00000397906 RPS18P62269 152 aaKnown RBP10.55□□□□□ -0.72
TTC28-201ENST00000397906 ESPNLQ6ZVH7 1005 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 LINC00346Q8IVM7 164 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 PHC2Q8IXK0 858 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 UCN3Q969E3 161 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 SORT1Q99523 831 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 HRASLSQ9HDD0 168 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 HS3ST3A1Q9Y663 406 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 LOXHD1Q8IVV2 1947 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 TMBIM6P55061 237 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 MOGQ16653 247 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 FGF22Q9HCT0 170 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 TMED7-TICAM2A0A0A6YYA0 188 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 B4GAT1O43505 415 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 SRFP11831 508 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 AGFG1P52594 562 aaKnown RBP10.55□□□□□ -0.72
TTC28-201ENST00000397906 C17orf67Q0P5P2 114 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 FXNQ16595 210 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 CCSMST1Q4G0I0 132 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 STEAP3Q658P3 488 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 RSPO2Q6UXX9 243 aaPredicted RBP10.55□□□□□ -0.72
TTC28-201ENST00000397906 LANCL2Q9NS86 450 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 TMED7Q9Y3B3 224 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 BMXP51813 675 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 SLC35A1P78382 337 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 OR5AS1Q8N127 324 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 MAFIPQ8WZ33 124 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 APMAPQ9HDC9 416 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 TRAPPC2LQ9UL33 140 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 AGTR1P30556 359 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 LEXMQ3ZCV2 418 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 NPSR1Q6W5P4 371 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 OR8J2Q8NGG1 315 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 MMP17Q9ULZ9 603 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 EXT1Q16394 746 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 AGAP7PQ5VUJ5 663 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 OR4F15Q8NGB8 312 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 FBXO27Q8NI29 283 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 AGAP4Q96P64 663 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 SLAMF8Q9P0V8 285 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 ZNF736B4DX44 427 aaPredicted RBP10.55□□□□□ -0.72
TTC28-201ENST00000397906 NOVA1P51513 510 aaKnown RBP10.55□□□□□ -0.72
TTC28-201ENST00000397906 RPL11P62913 178 aaKnown RBP10.55□□□□□ -0.72
TTC28-201ENST00000397906 FUNDC2Q9BWH2 189 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 SUCNR1Q9BXA5 334 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 NOVP48745 357 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 GPLD1P80108 840 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 ACSM3Q53FZ2 586 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 OLIG3Q7RTU3 272 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 SERPINA11Q86U17 422 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 LHPPQ9H008 270 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 LRFN1Q9P244 771 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 RETP07949 1114 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 ZNF136P52737 540 aa10.55□□□□□ -0.72
TTC28-201ENST00000397906 PRKYO43930 277 aa10.54□□□□□ -0.72
TTC28-201ENST00000397906 PRAMEF4O60810 478 aa10.54□□□□□ -0.72
TTC28-201ENST00000397906 BCAS1O75363 584 aaPredicted RBP10.54□□□□□ -0.72
TTC28-201ENST00000397906 ABHD16AO95870 558 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms