RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TMEFF2Q9UIK5 374 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-205ENST00000392004 SLC6A5Q9Y345 797 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 A3GALT2U3KPV4 340 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 ANKRD36A6QL64 1941 aa9.48□□□□□ -0.89
COL6A3-205ENST00000392004 ARID1AO14497 2285 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 A8MV72 311 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-205ENST00000392004 MYL12BO14950 172 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 TACR3P29371 465 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 NPRL3Q12980 569 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 PUM1Q14671 1186 aaKnown RBP eCLIP9.47□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF517Q6ZMY9 492 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-205ENST00000392004 SERPINA11Q86U17 422 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 TCEANCQ8N8B7 351 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 SLC39A7Q92504 469 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 C1QTNF3Q9BXJ4 246 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 NT5DC2Q9H857 520 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 SLC25A37Q9NYZ2 338 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 NPAP1Q9NZP6 1156 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 BOKQ9UMX3 212 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-205ENST00000392004 PRELID1Q9Y255 219 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 TRAV27A0A087WT01 109 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 SLC35F4A4IF30 521 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 C4orf51C9J302 202 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 PSMD9O00233 223 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF823P16415 610 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 HOXA6P31267 233 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 NAA10P41227 235 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-205ENST00000392004 SLC26A5P58743 744 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 GMFBP60983 142 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 EXT1Q16394 746 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 TIMM50Q3ZCQ8 353 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 CPZQ66K79 652 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 BEST3Q8N1M1 668 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 SLC41A2Q96JW4 573 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 CALHM2Q9HA72 323 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 CLN6Q9NWW5 311 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 RALYQ9UKM9 306 aaKnown RBP9.47□□□□□ -0.89
COL6A3-205ENST00000392004 GRIP1Q9Y3R0 1128 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 IGHV3-15A0A0B4J1V0 119 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 A0A0G2JPF8 293 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 HNRNPCL3B7ZW38 293 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 GYPBP06028 91 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 HNRNPCL4P0DMR1 293 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 INPP1P49441 399 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 BLVRAP53004 296 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 RBBP4Q09028 425 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 KIAA0040Q15053 153 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 TMPRSS12Q86WS5 348 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 CISD2Q8N5K1 135 aaKnown RBP9.47□□□□□ -0.89
COL6A3-205ENST00000392004 OR6T1Q8NGN1 323 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 SLC41A3Q96GZ6 507 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 ORAI3Q9BRQ5 295 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 ZPBPQ9BS86 351 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 PIGUQ9H490 435 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 C14orf119Q9NWQ9 140 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 ING3Q9NXR8 418 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 GRHPRQ9UBQ7 328 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 FBXO9Q9UK97 447 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-205ENST00000392004 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.47□□□□□ -0.89
COL6A3-205ENST00000392004 KCNE1BA0A087WTH5 132 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 ATP12AP54707 1039 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 DUSP2Q05923 314 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 E2F2Q14209 437 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 OR1C1Q15619 314 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 PROX2Q3B8N5 592 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 BCORP1Q8N888 145 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 C1orf216Q8TAB5 229 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 THEM6Q8WUY1 208 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 SDF2Q99470 211 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 RHNO1Q9BSD3 238 aa9.47□□□□□ -0.89
COL6A3-205ENST00000392004 MN1Q10571 1320 aaPredicted RBP9.46□□□□□ -0.89
COL6A3-205ENST00000392004 ALPK3Q96L96 1907 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 HEATR5BQ9P2D3 2071 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 EFCAB10A6NFE3 127 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 H7C1C5 153 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 TNFRSF21O75509 655 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 FAM87AP0C7U9 286 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF43P17038 809 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 MMP11P24347 488 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 LIPAP38571 399 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 DAPP51397 102 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 LCN6P62502 163 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 RUNX1T1Q06455 604 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.46□□□□□ -0.89
COL6A3-205ENST00000392004 COL28A1Q2UY09 1125 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 TBRG1Q3YBR2 411 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 ANKRD37Q7Z713 158 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 LINC00471Q8N535 108 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 OR11G2Q8NGC1 345 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 GPR119Q8TDV5 335 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 PINK1Q9BXM7 581 aa9.46□□□□□ -0.89
COL6A3-205ENST00000392004 PAQR5Q9NXK6 330 aaPredicted RBP9.46□□□□□ -0.89
COL6A3-205ENST00000392004 CCDC59Q9P031 241 aaKnown RBP9.46□□□□□ -0.89
COL6A3-205ENST00000392004 SERINC4A6NH21 518 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 ALX3O95076 343 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 YES1P07947 543 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 GCGRP47871 477 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 CTXN1P60606 82 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 PMP22Q01453 160 aa9.46□□□□□ -0.9
COL6A3-205ENST00000392004 CDK10Q15131 360 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms