RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 SPATA2Q9UM82 520 aa13.15□□□□□ -0.31
CD48-201ENST00000368045 ING4Q9UNL4 249 aa13.15□□□□□ -0.31
CD48-201ENST00000368045 RNF215Q9Y6U7 377 aa13.15□□□□□ -0.31
CD48-201ENST00000368045 A0A1W2PRG6 482 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 ZNF879B4DU55 563 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 ARPC3O15145 178 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 EGFP01133 1207 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 TNFP01375 233 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 TFP02787 698 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 HIST1H1CP16403 213 aaKnown RBP13.14□□□□□ -0.31
CD48-201ENST00000368045 VSX2P58304 361 aaPredicted RBP13.14□□□□□ -0.31
CD48-201ENST00000368045 C19orf57Q0VDD7 668 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 DYRK1AQ13627 763 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 IL10RAQ13651 578 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 CLPPQ16740 277 aaPredicted RBP13.14□□□□□ -0.31
CD48-201ENST00000368045 BCL2L15Q5TBC7 163 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 SLC22A10Q63ZE4 541 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 LAMTOR1Q6IAA8 161 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 KRT74Q7RTS7 529 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 ZNF440Q8IYI8 595 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 SNX33Q8WV41 574 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 ADAMTS14Q8WXS8 1223 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 ZMYND19Q96E35 227 aaPredicted RBP13.14□□□□□ -0.31
CD48-201ENST00000368045 MRGPRX1Q96LB2 322 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 VSTM2LQ96N03 204 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 GSDMCQ9BYG8 508 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 SLC19A3Q9BZV2 496 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 RANBP3Q9H6Z4 567 aaPredicted RBP13.14□□□□□ -0.31
CD48-201ENST00000368045 CERS4Q9HA82 394 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 NRIP3Q9NQ35 241 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 WBP1LQ9NX94 342 aa13.14□□□□□ -0.31
CD48-201ENST00000368045 PDCD5O14737 125 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 RDH16O75452 317 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 ITGA10O75578 1167 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 IGF2P01344 180 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 IGKV1D-16P01601 117 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 TCRBP04435 133 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 GYPBP06028 91 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 TYRP1P17643 537 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 ATF1P18846 271 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 CTHP32929 405 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 HTR2BP41595 481 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 SKP1P63208 163 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 MRPS21P82921 87 aaKnown RBP13.13□□□□□ -0.31
CD48-201ENST00000368045 FCN2Q15485 313 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 TP53I3Q53FA7 332 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 CEP78Q5JTW2 689 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 KIRREL2Q6UWL6 708 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 KIAA1324Q6UXG2 1013 aaKnown RBP13.13□□□□□ -0.31
CD48-201ENST00000368045 DGAT2L6Q6ZPD8 337 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 ARHGEF39Q8N4T4 335 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 SDR9C7Q8NEX9 313 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 OR7G1Q8NGA0 311 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 RPS4Y2Q8TD47 263 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 ADAMTS18Q8TE60 1221 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 ACTR6Q9GZN1 396 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 Q9N2J8 555 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 NUDT15Q9NV35 164 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 EMC3Q9P0I2 261 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 MRPS33Q9Y291 106 aaKnown RBP13.13□□□□□ -0.31
CD48-201ENST00000368045 IER3IP1Q9Y5U9 82 aa13.13□□□□□ -0.31
CD48-201ENST00000368045 A0A087WUJ7 227 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 ADAM11O75078 769 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 RNH1P13489 461 aaKnown RBP13.12□□□□□ -0.31
CD48-201ENST00000368045 RABIFP47224 123 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 IGLV3-21P80748 117 aaPredicted RBP13.12□□□□□ -0.31
CD48-201ENST00000368045 RIPPLY1Q0D2K3 151 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 UBE2NLQ5JXB2 153 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 LYPD4Q6UWN0 246 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 Q6ZSR6 202 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 NANOGNBQ7Z5D8 188 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 C9orf62Q8N4C0 152 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 OR5H6Q8NGV6 325 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 OR4K13Q8NH42 304 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 OIT3Q8WWZ8 545 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 SNAPC3Q92966 411 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 ZNF578Q96N58 590 aaPredicted RBP13.12□□□□□ -0.31
CD48-201ENST00000368045 GPX7Q96SL4 187 aaPredicted RBP13.12□□□□□ -0.31
CD48-201ENST00000368045 NMNAT2Q9BZQ4 307 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 OR51J1Q9H342 316 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 SEMA6CQ9H3T2 930 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 BRD7Q9NPI1 651 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 AKAP7Q9P0M2 348 aaPredicted RBP13.12□□□□□ -0.31
CD48-201ENST00000368045 NCDNQ9UBB6 729 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 ZNF337Q9Y3M9 751 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 HSPB11Q9Y547 144 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 KIAA0100Q14667 2235 aaKnown RBP13.12□□□□□ -0.31
CD48-201ENST00000368045 DOCK8Q8NF50 2099 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 TRBV2A0A0J9YWF9 115 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 TEX13CA0A0J9YWL9 993 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 SYNDIG1LA6NDD5 238 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 OR5K3A6NET4 321 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 AGRPO00253 132 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 PRAMEF2O60811 474 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 CTNSO60931 367 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 OR7A10O76100 309 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 ANXA3P12429 323 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 SNRPBP14678 240 aaKnown RBP13.12□□□□□ -0.31
CD48-201ENST00000368045 EDNRAP25101 427 aa13.12□□□□□ -0.31
CD48-201ENST00000368045 RPS11P62280 158 aaKnown RBP eCLIP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms