RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 POT1Q9NUX5 634 aa20.64■□□□□ 0.9
TRIM28-202ENST00000341753 PCDHGA9Q9Y5G4 932 aaKnown RBP20.64■□□□□ 0.9
TRIM28-202ENST00000341753 MDC1Q14676 2089 aaKnown RBP20.64■□□□□ 0.89
TRIM28-202ENST00000341753 ZP3P21754 424 aa20.64■□□□□ 0.89
TRIM28-202ENST00000341753 HSD17B2P37059 387 aa20.64■□□□□ 0.89
TRIM28-202ENST00000341753 MRPL2Q5T653 305 aaKnown RBP20.64■□□□□ 0.89
TRIM28-202ENST00000341753 FAM122CQ6P4D5 195 aa20.64■□□□□ 0.89
TRIM28-202ENST00000341753 FAM198BQ6UWH4 519 aa20.64■□□□□ 0.89
TRIM28-202ENST00000341753 RANBP3LQ86VV4 465 aaPredicted RBP20.64■□□□□ 0.89
TRIM28-202ENST00000341753 TOR1AIP2Q8NFQ8 470 aa20.64■□□□□ 0.89
TRIM28-202ENST00000341753 OR2L5Q8NG80 312 aa20.64■□□□□ 0.89
TRIM28-202ENST00000341753 OR4C6Q8NH72 309 aa20.64■□□□□ 0.89
TRIM28-202ENST00000341753 C7orf50Q9BRJ6 194 aaKnown RBP20.64■□□□□ 0.89
TRIM28-202ENST00000341753 SIGLEC7Q9Y286 467 aa20.64■□□□□ 0.89
TRIM28-202ENST00000341753 MFSD2BA6NFX1 497 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 ACOD1A6NK06 481 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 GSTZ1O43708 216 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-202ENST00000341753 SIX6O95475 246 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 CD53P19397 219 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 NDUFS1P28331 727 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 EEF1A1P68104 462 aaKnown RBP20.63■□□□□ 0.89
TRIM28-202ENST00000341753 CDK3Q00526 305 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 KRT33BQ14525 404 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 ASPGQ86U10 573 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 MEIOBQ8N635 442 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 CNOT9Q92600 299 aaKnown RBP20.63■□□□□ 0.89
TRIM28-202ENST00000341753 FGF13Q92913 245 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 AIFM2Q9BRQ8 373 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 LIN7BQ9HAP6 207 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 NOX3Q9HBY0 568 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 INPP5EQ9NRR6 644 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 SPHK1Q9NYA1 384 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 GNG8Q9UK08 70 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 PLSCR5A0PG75 271 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 STX11O75558 287 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 LPLP06858 475 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 PSMA6P60900 246 aaKnown RBP20.63■□□□□ 0.89
TRIM28-202ENST00000341753 HEPHL1Q6MZM0 1159 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 FCRLAQ7L513 359 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 UBE2Q1Q7Z7E8 422 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 TMIEQ8NEW7 156 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 SDR9C7Q8NEX9 313 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 FBXW5Q969U6 566 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 COX14Q96I36 57 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 FKRPQ9H9S5 495 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 NPDC1Q9NQX5 325 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-202ENST00000341753 KIF25Q9UIL4 384 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 SLC35A3Q9Y2D2 325 aa20.63■□□□□ 0.89
TRIM28-202ENST00000341753 A0A087WV48 116 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 TRAV1-2A0A0B4J238 106 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 TRBV2A0A0J9YWF9 115 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 IDSB3KWA1 339 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 TGM6O95932 706 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 ATP1B1P05026 303 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 ASGR2P07307 311 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 SLC2A5P22732 501 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 RPS11P62280 158 aaKnown RBP eCLIP20.62■□□□□ 0.89
TRIM28-202ENST00000341753 LINC00303Q3SY05 128 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 UBE2NLQ5JXB2 153 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 STPG2Q8N412 459 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 SIPA1Q96FS4 1042 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 ASB16Q96NS5 453 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 TNFRSF13CQ96RJ3 184 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 NOX4Q9NPH5 578 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 MEPEQ9NQ76 525 aaPredicted RBP20.62■□□□□ 0.89
TRIM28-202ENST00000341753 MBNL1Q9NR56 388 aaKnown RBP20.62■□□□□ 0.89
TRIM28-202ENST00000341753 SERGEFQ9UGK8 458 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 PCDHGA5Q9Y5G8 931 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 CHURC1-FNTBB4DL54 471 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 RCBTB2O95199 551 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 PCDH8O95206 1070 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 DCTDP32321 178 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 RPS15P62841 145 aaKnown RBP20.62■□□□□ 0.89
TRIM28-202ENST00000341753 METTL11BQ5VVY1 283 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 FAM98AQ8NCA5 519 aaKnown RBP20.62■□□□□ 0.89
TRIM28-202ENST00000341753 SUSD6Q92537 303 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 GFI1Q99684 422 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 SEMA4CQ9C0C4 833 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 PRSS16Q9NQE7 514 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 KCNE5Q9UJ90 142 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 BET1O15155 118 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 ARPC5O15511 151 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 DNAJB6O75190 326 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 EDNRAP25101 427 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 MAT2AP31153 395 aaKnown RBP20.62■□□□□ 0.89
TRIM28-202ENST00000341753 RAB28P51157 221 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 CDK5R1Q15078 307 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 FAM199XQ6PEV8 388 aaPredicted RBP20.62■□□□□ 0.89
TRIM28-202ENST00000341753 OR4K13Q8NH42 304 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 SLC25A38Q96DW6 304 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 OR1F2PQ96R84 312 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 SDF2Q99470 211 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 ZNF559Q9BR84 538 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 PITHD1Q9GZP4 211 aaPredicted RBP20.62■□□□□ 0.89
TRIM28-202ENST00000341753 ADAP2Q9NPF8 381 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 ANKRD10Q9NXR5 420 aa20.62■□□□□ 0.89
TRIM28-202ENST00000341753 IMPA2O14732 288 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 GNB5O14775 395 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 SIGLEC5O15389 551 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 NMBP08949 121 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms