RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 NXNL2Q5VZ03 156 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 FCRL6Q6DN72 434 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 PLBD1Q6P4A8 553 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 VRK2Q86Y07 508 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 CYB561A3Q8NBI2 242 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 OR2T27Q8NH04 317 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 SPRTNQ9H040 489 aaPredicted RBP6.34□□□□□ -1.4
SF3B1-201ENST00000335508 PIKFYVEQ9Y2I7 2098 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 IGHV5-51A0A0C4DH38 117 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 FABP12A6NFH5 140 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 FRG2CA6NGY1 282 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 CSO75390 466 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ITGB2P05107 769 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 SPARCP09486 303 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 GSTT2BP0CG30 244 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TCEA1P23193 301 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 GRK5P34947 590 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 GMFBP60983 142 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF45Q02386 682 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 SGCAQ16586 387 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 EEF1A1P5Q5VTE0 462 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 FAM131AQ6UXB0 335 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 DPY19L2P2Q6ZN68 376 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 SLC35A4Q96G79 324 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 CLEC4MQ9H2X3 399 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 FKRPQ9H9S5 495 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 NGBQ9NPG2 151 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 GPR160Q9UJ42 338 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 KRBA1A5PL33 1030 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 DLGAP1O14490 977 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 CBR3O75828 277 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 MAOAP21397 527 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 CRHBPP24387 322 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 EDNRAP25101 427 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 OR3A3P47888 321 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 OR3A2P47893 321 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 GPR85P60893 370 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 MRPS10P82664 201 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 C1orf140Q5VVS0 124 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 RAB12Q6IQ22 244 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 DHRS13Q6UX07 377 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 NLGN4XQ8N0W4 816 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 JAGN1Q8N5M9 183 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 NLGN4YQ8NFZ3 816 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 OR1J4Q8NGS1 313 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 PPP1R35Q8TAP8 253 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TSLPQ969D9 159 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 FAM46AQ96IP4 442 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 C12orf10Q9HB07 376 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 FAM60AQ9NP50 221 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ACER3Q9NUN7 267 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 P4HTMQ9NXG6 502 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 NAV3Q8IVL0 2385 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 A0A0G2JMZ2 1700 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TMED7-TICAM2A0A0A6YYA0 188 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TFAP2AP05549 437 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 CKMT1AP12532 417 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 SFTPDP35247 375 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 WNT3P56703 355 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 PCBP3P57721 371 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TSPAN5P62079 268 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ERV3-1Q14264 604 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 RPS26P11Q5JNZ5 115 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 KDM4DQ6B0I6 523 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF322Q6U7Q0 402 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 C3P1Q6ZMU1 363 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ZSCAN4Q8NAM6 433 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 C12orf43Q96C57 262 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 SOX17Q9H6I2 414 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 BRD7Q9NPI1 651 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TMED7Q9Y3B3 224 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 USF3Q68DE3 2245 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 MYOCOSA0A1B0GUC4 107 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 C4orf47A7E2U8 309 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 KCNK2O95069 426 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 B3GALT4O96024 378 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ANKRD34CP0C6C1 535 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TNFRSF1BP20333 461 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 PIGAP37287 484 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 GDI2P50395 445 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 PUDPQ08623 228 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 IL10RAQ13651 578 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 OCLNQ16625 522 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TSTQ16762 297 aaKnown RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TMEM201Q5SNT2 666 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TCEAL6Q6IPX3 200 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 C1orf94Q6P1W5 598 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 GUSBP11Q6P575 273 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 LRFN4Q6PJG9 635 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 H1FNTQ75WM6 255 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 ZBTB8BQ8NAP8 495 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TMEM163Q8TC26 289 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 SCGB3A2Q96PL1 93 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TMEM43Q9BTV4 400 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 KATNB1Q9BVA0 655 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TRPM7Q96QT4 1865 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 TRBV2A0A0J9YWF9 115 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 DNPH1O43598 174 aa6.33□□□□□ -1.4
SF3B1-201ENST00000335508 POU3F2P20265 443 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-201ENST00000335508 GDF1P27539 372 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms