RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 PRDM9Q9NQV7 894 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 B4DGG1 531 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 TACR3P29371 465 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 ACSM1Q08AH1 577 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 MAP4K2Q12851 820 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 SFRP5Q5T4F7 317 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 STAG3L2P0CL84 134 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 P2RX1P51575 399 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 CASP6P55212 293 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 PTPRCAPQ14761 206 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 PAN3Q58A45 887 aaKnown RBP13.4□□□□□ -0.26
COL7A1-201ENST00000328333 MEX3BQ6ZN04 569 aaKnown RBP13.4□□□□□ -0.26
COL7A1-201ENST00000328333 Q6ZNX1 250 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 CNTN4Q8IWV2 1026 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 RPS26P62854 115 aaKnown RBP13.4□□□□□ -0.26
COL7A1-201ENST00000328333 Q6ZVU0 165 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 OR10Z1Q8NGY1 313 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 ST6GALNAC5Q9BVH7 336 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 PBX4Q9BYU1 374 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 KCNK13Q9HB14 408 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 GABARAPH6UMI1 98 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 GABARAPO95166 117 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 ATP1B3P54709 279 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 GPLD1P80108 840 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 SLC7A9P82251 487 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 OR1M1Q8NGA1 313 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 CLSTN3Q9BQT9 956 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 KMT2EQ8IZD2 1858 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 NOGQ13253 232 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 BCL7AQ4VC05 210 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 OTUD1Q5VV17 481 aaPredicted RBP13.4□□□□□ -0.26
COL7A1-201ENST00000328333 DBX2Q6ZNG2 339 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 SDSLQ96GA7 329 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 DHRS4Q9BTZ2 278 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 AP1G1O43747 822 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 SLC5A2P31639 672 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 TRHRP34981 398 aaPredicted RBP13.4□□□□□ -0.26
COL7A1-201ENST00000328333 CDC20Q12834 499 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 LRRC73Q5JTD7 316 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 ALKAL2Q6UX46 152 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 GAR1Q9NY12 217 aaKnown RBP13.4□□□□□ -0.26
COL7A1-201ENST00000328333 STRAPQ9Y3F4 350 aaKnown RBP13.4□□□□□ -0.26
COL7A1-201ENST00000328333 LOC105369274A0A096LPK9 316 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 CIDEAO60543 219 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 DDAH2O95865 285 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 GRPRP30550 384 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 MEP1BQ16820 701 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 MRPL21Q7Z2W9 205 aaKnown RBP13.39□□□□□ -0.27
COL7A1-201ENST00000328333 OR4N4Q8N0Y3 316 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 SLAIN1Q8ND83 568 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 C12orf57Q99622 126 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 CHRDL1Q9BU40 450 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 PGAP2Q9UHJ9 254 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 TMEM72A0PK05 275 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 OR2T7P0C7T2 308 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 GABRA2P47869 451 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 RAET1LQ5VY80 246 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 LBX2Q6XYB7 198 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 OR2T27Q8NH04 317 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 LRFN5Q96NI6 719 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 HCAR1Q9BXC0 346 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 HIF1ANQ9NWT6 349 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 NPIPA5A0A0B4J1W7 369 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 CEBPZOSA8MTT3 80 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 ITGB2P05107 769 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 CDH20Q9HBT6 801 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 GJD2Q9UKL4 321 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 G3V2L1 256 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 ADGRE4PQ86SQ3 457 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 TMEM59Q9BXS4 323 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 CHRDQ9H2X0 955 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 C11orf49Q9H6J7 331 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 NSA2O95478 260 aaKnown RBP13.39□□□□□ -0.27
COL7A1-201ENST00000328333 LYPD4Q6UWN0 246 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 FBXW12Q6X9E4 464 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 MTMR14Q8NCE2 650 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 TRDV1A0A1B0GX56 115 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 KLRG2A4D1S0 409 aaPredicted RBP13.39□□□□□ -0.27
COL7A1-201ENST00000328333 IGHG1P01857 330 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 GJA5P36382 358 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 CTXN1P60606 82 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 EBPQ15125 230 aaKnown RBP13.39□□□□□ -0.27
COL7A1-201ENST00000328333 CDS1Q92903 461 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 FUBP1Q96AE4 644 aaKnown RBP13.39□□□□□ -0.27
COL7A1-201ENST00000328333 APLNRP35414 380 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 HBA1P69905 142 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 CTSL3PQ5NE16 218 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 OTOP2Q7RTS6 562 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 BPIFB2Q8N4F0 458 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 COMMD1Q8N668 190 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 OR5M8Q8NGP6 311 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 GNPNAT1Q96EK6 184 aaPredicted RBP13.39□□□□□ -0.27
COL7A1-201ENST00000328333 SAMD8Q96LT4 415 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 POM121CA8CG34 1229 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 BMP4P12644 408 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 SNRPGP62308 76 aaKnown RBP13.39□□□□□ -0.27
COL7A1-201ENST00000328333 ENDOGQ14249 297 aaKnown RBP13.39□□□□□ -0.27
COL7A1-201ENST00000328333 DEFB134Q4QY38 66 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 CNKSR3Q6P9H4 555 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 SUSD1Q6UWL2 747 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms