RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 BBS10Q8TAM1 723 aa14.46□□□□□ -0.09
LSM1-201ENST00000311351 STON2Q8WXE9 905 aa14.46□□□□□ -0.09
LSM1-201ENST00000311351 DDIT4LQ96D03 193 aa14.46□□□□□ -0.09
LSM1-201ENST00000311351 MBD6Q96DN6 1003 aa14.46□□□□□ -0.09
LSM1-201ENST00000311351 ZHX1-C8orf76Q96EF9 292 aa14.46□□□□□ -0.09
LSM1-201ENST00000311351 SPATA9Q9BWV2 254 aa14.46□□□□□ -0.09
LSM1-201ENST00000311351 RSPO3Q9BXY4 272 aaPredicted RBP14.46□□□□□ -0.09
LSM1-201ENST00000311351 UBTD1Q9HAC8 227 aa14.46□□□□□ -0.09
LSM1-201ENST00000311351 CACYBPQ9HB71 228 aaKnown RBP14.46□□□□□ -0.09
LSM1-201ENST00000311351 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.46□□□□□ -0.09
LSM1-201ENST00000311351 GPR52Q9Y2T5 361 aa14.46□□□□□ -0.09
LSM1-201ENST00000311351 A0A0G2JND7 137 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 A0A1W2PP18 115 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 ZNF724A8MTY0 619 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 C5orf58C9J3I9 102 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 ZNF208O43345 1280 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 KLF4O43474 513 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 DSCAMO60469 2012 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 ADAP00813 363 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 ARAFP10398 606 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 PPP3CBP16298 524 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 CD53P19397 219 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 IL32P24001 234 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 HOXC5Q00444 222 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 BNIP2Q12982 314 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 DEFB113Q30KQ7 82 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 ZNF311Q5JNZ3 666 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 GALNT5Q7Z7M9 940 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 ALPK1Q96QP1 1244 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 CPPED1Q9BRF8 314 aaPredicted RBP14.45□□□□□ -0.1
LSM1-201ENST00000311351 ADAM19Q9H013 955 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 BCL2L10Q9HD36 194 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 TMEM181Q9P2C4 612 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 EDARQ9UNE0 448 aa14.45□□□□□ -0.1
LSM1-201ENST00000311351 IGKV3D-15A0A087WSY6 115 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 DNPH1O43598 174 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 LYZL6O75951 148 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 PGM3O95394 542 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 IGHV3-9P01782 118 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 CLK1P49759 484 aaKnown RBP14.44□□□□□ -0.1
LSM1-201ENST00000311351 IRX1P78414 480 aaPredicted RBP14.44□□□□□ -0.1
LSM1-201ENST00000311351 HSP90B2PQ58FF3 399 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 BEX5Q5H9J7 111 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 SFRP5Q5T4F7 317 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 PRAMEF8Q5VWM4 474 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 PRAMEF7Q5VXH5 474 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 WBP2NLQ6ICG8 309 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 DLEU7Q6UYE1 221 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 Q6ZT83 130 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 DHDDSQ86SQ9 333 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 RETREG3Q86VR2 466 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 COMTD1Q86VU5 262 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 STEAP2Q8NFT2 490 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 PIGXQ8TBF5 258 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 KISS1RQ969F8 398 aaPredicted RBP14.44□□□□□ -0.1
LSM1-201ENST00000311351 OR10A4Q9H209 315 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 TMEM45AQ9NWC5 275 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 EMC3Q9P0I2 261 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 LEF1Q9UJU2 399 aaPredicted RBP14.44□□□□□ -0.1
LSM1-201ENST00000311351 IFT52Q9Y366 437 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 ZNF469Q96JG9 3925 aaPredicted RBP14.44□□□□□ -0.1
LSM1-201ENST00000311351 ARID1AO14497 2285 aa14.44□□□□□ -0.1
LSM1-201ENST00000311351 CADP27708 2225 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 PLAUP00749 431 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 FPR1P21462 350 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 PPIBP23284 216 aaKnown RBP14.43□□□□□ -0.1
LSM1-201ENST00000311351 CXCR1P25024 350 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 FKBP2P26885 142 aaKnown RBP14.43□□□□□ -0.1
LSM1-201ENST00000311351 IDUAP35475 653 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 COPZ1P61923 177 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 CDK6Q00534 326 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 SF3A3Q12874 501 aaKnown RBP eCLIP14.43□□□□□ -0.1
LSM1-201ENST00000311351 PDK3Q15120 406 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 TAB1Q15750 504 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 BHLHA15Q7RTS1 189 aaPredicted RBP14.43□□□□□ -0.1
LSM1-201ENST00000311351 ZNF100Q8IYN0 542 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 C3orf49Q96BT1 292 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 PLPPR2Q96GM1 343 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 TMEM120AQ9BXJ8 343 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 RABEP2Q9H5N1 569 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 ZNF232Q9UNY5 417 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 TRIM33Q9UPN9 1127 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 TRAPPC4Q9Y296 219 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 NOSIPQ9Y314 301 aaKnown RBP14.43□□□□□ -0.1
LSM1-201ENST00000311351 GMEB1Q9Y692 573 aa14.43□□□□□ -0.1
LSM1-201ENST00000311351 TMEM229AB2RXF0 380 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 ETS2P15036 469 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 IGHV1-2P23083 117 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 AQP1P29972 269 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 ADSLP30566 484 aaPredicted RBP14.42□□□□□ -0.1
LSM1-201ENST00000311351 NTF4P34130 210 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 SLC16A1P53985 500 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 SLC35A1P78382 337 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 H3F3AP84243 136 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 ITGADQ13349 1161 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 CEACAM7Q14002 265 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 SCARB2Q14108 478 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 SELPLGQ14242 412 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 P2RY6Q15077 328 aa14.42□□□□□ -0.1
LSM1-201ENST00000311351 OR7A5Q15622 319 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms