RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 REEP5Q00765 189 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 LILRA3Q8N6C8 439 aaPredicted RBP17.97■□□□□ 0.47
USP48-201ENST00000308271 UCN3Q969E3 161 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 SLC6A14Q9UN76 642 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 HMGN4O00479 90 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 HOXD11P31277 338 aaPredicted RBP17.97■□□□□ 0.47
USP48-201ENST00000308271 ZNF529Q6P280 563 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 RPS10P5Q9NQ39 176 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 DYRK1AQ13627 763 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 Q499Y3 187 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 TMEM64Q6YI46 380 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 TMUB2Q71RG4 321 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 LNX2Q8N448 690 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 SSC5DA1L4H1 1573 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 SLC5A10A0PJK1 596 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 HNRNPA1P09651 372 aaKnown RBP eCLIP17.96■□□□□ 0.47
USP48-201ENST00000308271 SEC61A1P61619 476 aaKnown RBP17.96■□□□□ 0.47
USP48-201ENST00000308271 ZNF169Q14929 603 aaPredicted RBP17.96■□□□□ 0.47
USP48-201ENST00000308271 HNRNPA1L2Q32P51 320 aaKnown RBP17.96■□□□□ 0.47
USP48-201ENST00000308271 C1orf94Q6P1W5 598 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 LAS2Q8IYD9 372 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 SMCHD1A6NHR9 2005 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 GGT3PA6NGU5 568 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 SGCEO43556 437 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 BHLHA9Q7RTU4 235 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 OR52E1Q8NGJ3 308 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 HIST1H2AAQ96QV6 131 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 PRR14Q9BWN1 585 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 COL4A1P02462 1669 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 TVP23AA6NH52 213 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 OR5K4A6NMS3 321 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 OR52A4PA6NMU1 304 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 DGCR2P98153 550 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 CDK3Q00526 305 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 IFITM3Q01628 133 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 BEX5Q5H9J7 111 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 PRSS45Q7RTY3 260 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 OR6N1Q8NGY5 312 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 ADAMTS18Q8TE60 1221 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 TNFRSF13CQ96RJ3 184 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 HCAR1Q9BXC0 346 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 HINT3Q9NQE9 182 aaKnown RBP17.96■□□□□ 0.47
USP48-201ENST00000308271 FTSJ1Q9UET6 329 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 NUMA1Q14980 2115 aa17.96■□□□□ 0.47
USP48-201ENST00000308271 TOR1AO14656 332 aa17.96■□□□□ 0.46
USP48-201ENST00000308271 FZD6O60353 706 aa17.96■□□□□ 0.46
USP48-201ENST00000308271 FADS1O60427 444 aa17.96■□□□□ 0.46
USP48-201ENST00000308271 ZDHHC11BP0C7U3 371 aa17.96■□□□□ 0.46
USP48-201ENST00000308271 CPMP14384 443 aa17.96■□□□□ 0.46
USP48-201ENST00000308271 FGF9P31371 208 aaPredicted RBP17.96■□□□□ 0.46
USP48-201ENST00000308271 CST6Q15828 149 aa17.96■□□□□ 0.46
USP48-201ENST00000308271 OVCH1Q7RTY7 1134 aa17.96■□□□□ 0.46
USP48-201ENST00000308271 SLC25A44Q96H78 314 aaPredicted RBP17.96■□□□□ 0.46
USP48-201ENST00000308271 SLC46A2Q9BY10 475 aa17.96■□□□□ 0.46
USP48-201ENST00000308271 SBK2P0C263 348 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 HOXB2P14652 356 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 GRM7Q14831 915 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 SSX1Q16384 188 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 RAB11FIP2Q7L804 512 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 GLCCI1Q86VQ1 547 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 CDK5RAP2Q96SN8 1893 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 HMGB3O15347 200 aaKnown RBP17.95■□□□□ 0.46
USP48-201ENST00000308271 RNGTTO60942 597 aaKnown RBP17.95■□□□□ 0.46
USP48-201ENST00000308271 CRYBB2P43320 205 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 AWAT2Q6E213 333 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 SLC43A2Q8N370 569 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 WFDC5Q8TCV5 224 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 STK35Q8TDR2 534 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 APH1BQ8WW43 257 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 TEAD3Q99594 435 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 LMF2Q9BU23 707 aaKnown RBP17.95■□□□□ 0.46
USP48-201ENST00000308271 OR8G3PP0DMU2 310 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 CDK2P24941 298 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 YIF1BQ5BJH7 314 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 C12orf73Q69YU5 71 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 OLIG3Q7RTU3 272 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 SLC22A12Q96S37 553 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 ATF6BQ99941 703 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 ACOXLQ9NUZ1 547 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 HHLA2Q9UM44 414 aa17.95■□□□□ 0.46
USP48-201ENST00000308271 AGPAT2O15120 278 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 B4GALT3O60512 393 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 SCO1O75880 301 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 IFNGR1P15260 489 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 IGFBP4P22692 258 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 GALK2Q01415 458 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 AANATQ16613 207 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 CLLU1Q5K131 121 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 ZNF620Q6ZNG0 422 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 CAMKMTQ7Z624 323 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 OR4C15Q8NGM1 316 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 VRK1Q99986 396 aaPredicted RBP17.94■□□□□ 0.46
USP48-201ENST00000308271 DNTTIP1Q9H147 329 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 SSX4O60224 188 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 RAD1O60671 282 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 PLGP00747 810 aaPredicted RBP17.94■□□□□ 0.46
USP48-201ENST00000308271 SRMP19623 302 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 ERVFC1P60507 584 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 LIN7BQ9HAP6 207 aa17.94■□□□□ 0.46
USP48-201ENST00000308271 AGAP14A8MT82 685 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms