RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 FAM186AA6NE01 2351 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 TRAV36DV7A0A075B6V5 113 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 PRAMEF25A6NGN4 478 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 CAMK2DQ13557 499 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 PPA1Q15181 289 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 FAM71E1Q6IPT2 247 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 PRR18Q8N4B5 295 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 CCDC71LQ8N9Z2 235 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 PIGCQ92535 297 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 RAB39BQ96DA2 213 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 ARRDC1-AS1Q9H2J1 176 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 CDCP1Q9H5V8 836 aa17.21■□□□□ 0.35
PCDH1-201ENST00000287008 A0A1W2PQL4 384 aaPredicted RBP17.2■□□□□ 0.34
PCDH1-201ENST00000287008 AGAP5A6NIR3 686 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 LPLP06858 475 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 AQP2P41181 271 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 LSSP48449 732 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 LIM2P55344 173 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 C4orf36Q96KX1 117 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 ZNF583Q96ND8 569 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 MEN1O00255 615 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 ST6GAL1P15907 406 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 ENPP1P22413 925 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 OPRD1P41143 372 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 ZNF81P51508 661 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 ZNF181Q2M3W8 571 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 PLCXD3Q63HM9 321 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 THOC3Q96J01 351 aaKnown RBP17.2■□□□□ 0.34
PCDH1-201ENST00000287008 C1orf198Q9H425 327 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 BABAM2Q9NXR7 383 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 TMEM184BQ9Y519 407 aaPredicted RBP17.2■□□□□ 0.34
PCDH1-201ENST00000287008 GFYI3L273 518 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 ARNTP27540 789 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 SFRP4Q6FHJ7 346 aaPredicted RBP17.2■□□□□ 0.34
PCDH1-201ENST00000287008 CHPT1Q8WUD6 406 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 CALHM2Q9HA72 323 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 LOC105369274A0A096LPK9 316 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 METTL12A8MUP2 240 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 J3KTA2 159 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 PLRG1O43660 514 aaKnown RBP17.2■□□□□ 0.34
PCDH1-201ENST00000287008 B4GALT3O60512 393 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 GLSO94925 669 aaPredicted RBP17.2■□□□□ 0.34
PCDH1-201ENST00000287008 PRKAR1BP31321 381 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 KCNAB1Q14722 419 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 NKPD1Q17RQ9 610 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 VHLLQ6RSH7 139 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 TSSK4Q6SA08 328 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 SYT13Q7L8C5 426 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 TMEM150AQ86TG1 271 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 OR4N4Q8N0Y3 316 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 STT3BQ8TCJ2 826 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 MS4A6EQ96DS6 147 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 ERVK13-1Q9NX77 482 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 TRIOBPQ9H2D6 2365 aa17.2■□□□□ 0.34
PCDH1-201ENST00000287008 IGHV3-20A0A0C4DH32 117 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 FBP2O00757 339 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 DNAJB6O75190 326 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 GLB1P16278 677 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 FXYD4P59646 89 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 BEST3Q8N1M1 668 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 USB1Q9BQ65 265 aaKnown RBP17.19■□□□□ 0.34
PCDH1-201ENST00000287008 GABBR2O75899 941 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 ITGB2P05107 769 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 CGB2Q6NT52 195 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 ZNF610Q8N9Z0 462 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 OR1J2Q8NGS2 313 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 CCL4L1Q8NHW4 92 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 SIDT1Q9NXL6 827 aaKnown RBP17.19■□□□□ 0.34
PCDH1-201ENST00000287008 COQ3Q9NZJ6 369 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 MGAT4CQ9UBM8 478 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 CENPSQ8N2Z9 138 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 FOXRED1Q96CU9 486 aaPredicted RBP17.19■□□□□ 0.34
PCDH1-201ENST00000287008 COG8Q96MW5 612 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 TNFRSF13CQ96RJ3 184 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 BCL7BQ9BQE9 202 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 PAPOLGQ9BWT3 736 aaKnown RBP17.19■□□□□ 0.34
PCDH1-201ENST00000287008 LHPPQ9H008 270 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 PCDHGA8Q9Y5G5 932 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 AKAP11Q9UKA4 1901 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 M0R233 179 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 ERVK-16P61578 105 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 DEFA5Q01523 94 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 LEXMQ3ZCV2 418 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 SLC36A2Q495M3 483 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 LRRC56Q8IYG6 542 aaPredicted RBP17.19■□□□□ 0.34
PCDH1-201ENST00000287008 C7orf34Q96L11 122 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 SLC25A18Q9H1K4 315 aa17.19■□□□□ 0.34
PCDH1-201ENST00000287008 SEC16AO15027 2179 aa17.18■□□□□ 0.34
PCDH1-201ENST00000287008 NSA2O95478 260 aaKnown RBP17.18■□□□□ 0.34
PCDH1-201ENST00000287008 SERPINE2P07093 398 aa17.18■□□□□ 0.34
PCDH1-201ENST00000287008 DNASE1P24855 282 aa17.18■□□□□ 0.34
PCDH1-201ENST00000287008 CTGFP29279 349 aa17.18■□□□□ 0.34
PCDH1-201ENST00000287008 CHRNB4P30926 498 aa17.18■□□□□ 0.34
PCDH1-201ENST00000287008 SEC61A1P61619 476 aaKnown RBP17.18■□□□□ 0.34
PCDH1-201ENST00000287008 ZNF750Q32MQ0 723 aa17.18■□□□□ 0.34
PCDH1-201ENST00000287008 UBE2UQ5VVX9 321 aa17.18■□□□□ 0.34
PCDH1-201ENST00000287008 Q6ZS52 159 aa17.18■□□□□ 0.34
PCDH1-201ENST00000287008 APMAPQ9HDC9 416 aa17.18■□□□□ 0.34
PCDH1-201ENST00000287008 PAPPA2Q9BXP8 1791 aa17.18■□□□□ 0.34
PCDH1-201ENST00000287008 TRAPPC2LH3BP13 241 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms