RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 V9GYY5 206 aaPredicted RBP11.24□□□□□ -0.61
CD44-203ENST00000278386 CUBNO60494 3623 aa11.24□□□□□ -0.61
CD44-203ENST00000278386 TMEM72A0PK05 275 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 HMGN4O00479 90 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 TLX2O43763 284 aaPredicted RBP11.23□□□□□ -0.61
CD44-203ENST00000278386 CD5LO43866 347 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 SNUPNO95149 360 aaKnown RBP11.23□□□□□ -0.61
CD44-203ENST00000278386 CHRM4P08173 479 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 GUSBP08236 651 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 UQCRBP14927 111 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 PTAFRP25105 342 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 CD40P25942 277 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 FKBP2P26885 142 aaKnown RBP11.23□□□□□ -0.61
CD44-203ENST00000278386 CLK1P49759 484 aaKnown RBP11.23□□□□□ -0.61
CD44-203ENST00000278386 SLC16A1P53985 500 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 PLAURQ03405 335 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 GNA13Q14344 377 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 SYPL1Q16563 259 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 CLEC2AQ6UVW9 174 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 ADGRG3Q86Y34 549 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 DEPDC4Q8N2C3 294 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 ANKFN1Q8N957 763 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 PNPT1Q8TCS8 783 aaKnown RBP11.23□□□□□ -0.61
CD44-203ENST00000278386 CNOT9Q92600 299 aaKnown RBP11.23□□□□□ -0.61
CD44-203ENST00000278386 ZG16BQ96DA0 208 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 CCDC115Q96NT0 180 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 PANX1Q96RD7 426 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 NAA11Q9BSU3 229 aaPredicted RBP11.23□□□□□ -0.61
CD44-203ENST00000278386 TMEM109Q9BVC6 243 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 REPIN1Q9BWE0 567 aaKnown RBP11.23□□□□□ -0.61
CD44-203ENST00000278386 GRIP2Q9C0E4 1043 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 C20orf27Q9GZN8 174 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 SLC38A1Q9H2H9 487 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 MEAF6Q9HAF1 191 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 KCNK9Q9NPC2 374 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 CBLN4Q9NTU7 201 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 TMEM181Q9P2C4 612 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 SLC9A8Q9Y2E8 581 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 SLC25A15Q9Y619 301 aa11.23□□□□□ -0.61
CD44-203ENST00000278386 YLPM1P49750 1951 aaKnown RBP11.23□□□□□ -0.61
CD44-203ENST00000278386 IGHV4-30-2A0A087WSY4 118 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 GOLGA8QA0A0J9YX86 632 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 PRAMEF27A3QJZ7 478 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 GOLGA8OA6NCC3 632 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 E7EQL1 145 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 GOLGA8NF8WBI6 632 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 C1QCP02747 245 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 THBS1P07996 1170 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 ITGA5P08648 1049 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 ALDOCP09972 364 aaKnown RBP11.22□□□□□ -0.61
CD44-203ENST00000278386 NR2F1P10589 423 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 IL7RP16871 459 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 TACR3P29371 465 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 TTKP33981 857 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 FABP6P51161 128 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 FOXG1P55316 489 aaPredicted RBP11.22□□□□□ -0.61
CD44-203ENST00000278386 UFM1P61960 85 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 SLC35A1P78382 337 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 IRX1P78414 480 aaPredicted RBP11.22□□□□□ -0.61
CD44-203ENST00000278386 STX3Q13277 289 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 GABRA6Q16445 453 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 MRPL2Q5T653 305 aaKnown RBP11.22□□□□□ -0.61
CD44-203ENST00000278386 OR7E24Q6IFN5 339 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 WDR93Q6P2C0 686 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 KLHL24Q6TFL4 600 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 B3GLCTQ6Y288 498 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 ZNF621Q6ZSS3 439 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 ALPK2Q86TB3 2170 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 CMIPQ8IY22 773 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 LRRC34Q8IZ02 419 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 MUC15Q8N387 334 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 HTRA1Q92743 480 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 ZBTB9Q96C00 473 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 TRNT1Q96Q11 434 aaKnown RBP11.22□□□□□ -0.61
CD44-203ENST00000278386 ZBTB18Q99592 522 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 DHRS9Q9BPW9 319 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 INPP5KQ9BT40 448 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 C1QTNF6Q9BXI9 259 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 SSU72Q9NP77 194 aaKnown RBP11.22□□□□□ -0.61
CD44-203ENST00000278386 PNPOQ9NVS9 261 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 BTNL2Q9UIR0 455 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 OSGIN1Q9UJX0 560 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 TRAPPC4Q9Y296 219 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 FLVCR1Q9Y5Y0 555 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 ATP23Q9Y6H3 246 aa11.22□□□□□ -0.61
CD44-203ENST00000278386 CFAP73A6NFT4 308 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 CCDC154A6NI56 674 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 AGAP5A6NIR3 686 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 EIF1BO60739 113 aaKnown RBP11.21□□□□□ -0.61
CD44-203ENST00000278386 GSNP06396 782 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 IMPDH2P12268 514 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 CDKN2CP42773 168 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 TXNL4AP83876 142 aaKnown RBP11.21□□□□□ -0.61
CD44-203ENST00000278386 RAB35Q15286 201 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 CEP85LQ5SZL2 805 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 OTUD3Q5T2D3 398 aaPredicted RBP11.21□□□□□ -0.61
CD44-203ENST00000278386 C11orf71Q6IPW1 123 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 HMBOX1Q6NT76 420 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 LRRC74BQ6ZQY2 392 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 DNM1P46Q6ZS02 220 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms