RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SULT1C2O00338 296 aa17.85■□□□□ 0.45
UPF1-201ENST00000262803 REEP5Q00765 189 aa17.85■□□□□ 0.45
UPF1-201ENST00000262803 PDE7AQ13946 482 aa17.85■□□□□ 0.45
UPF1-201ENST00000262803 GPR18Q14330 331 aa17.85■□□□□ 0.45
UPF1-201ENST00000262803 FGFBP1Q14512 234 aa17.85■□□□□ 0.45
UPF1-201ENST00000262803 C3orf38Q5JPI3 329 aa17.85■□□□□ 0.45
UPF1-201ENST00000262803 PIP5KL1Q5T9C9 394 aa17.85■□□□□ 0.45
UPF1-201ENST00000262803 TAAR8Q969N4 342 aa17.85■□□□□ 0.45
UPF1-201ENST00000262803 C19orf12Q9NSK7 152 aa17.85■□□□□ 0.45
UPF1-201ENST00000262803 DNMT3BQ9UBC3 853 aaKnown RBP17.85■□□□□ 0.45
UPF1-201ENST00000262803 ZNF223Q9UK11 482 aaPredicted RBP17.85■□□□□ 0.45
UPF1-201ENST00000262803 FBXO45P0C2W1 286 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 ARAFP10398 606 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 USF2Q15853 346 aaPredicted RBP17.84■□□□□ 0.45
UPF1-201ENST00000262803 ZNF684Q5T5D7 378 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 SLC16A14Q7RTX9 510 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 SPRED1Q7Z699 444 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 PRR22Q8IZ63 422 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 RSPRY1Q96DX4 576 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 SLC41A2Q96JW4 573 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 ANKRD19PQ9H560 264 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 B3GAT1Q9P2W7 334 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 TLCD2A6NGC4 264 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 GOSR2O14653 212 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 TNFRSF10CO14798 259 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 PAHP00439 452 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 NFYAP23511 347 aaPredicted RBP17.84■□□□□ 0.45
UPF1-201ENST00000262803 SYPL1Q16563 259 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 SDR9C7Q8NEX9 313 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 WDR83Q9BRX9 315 aaKnown RBP17.84■□□□□ 0.45
UPF1-201ENST00000262803 CNTRLQ7Z7A1 2325 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 HMX3A6NHT5 357 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 A6NL46 340 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 GAPDHSO14556 408 aaPredicted RBP17.84■□□□□ 0.45
UPF1-201ENST00000262803 OR7A17O14581 309 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 SRPXP78539 464 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 C17orf67Q0P5P2 114 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 BCL7AQ4VC05 210 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 LPCAT3Q6P1A2 487 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 KLHDC9Q8NEP7 349 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 SEMA6CQ9H3T2 930 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 CXXC1Q9P0U4 656 aaPredicted RBP17.84■□□□□ 0.45
UPF1-201ENST00000262803 THAP10Q9P2Z0 257 aaPredicted RBP17.84■□□□□ 0.45
UPF1-201ENST00000262803 MYH4Q9Y623 1939 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 LRP5LA4QPB2 252 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 H0YGG7 62 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 SSX5O60225 188 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 SCAF4O95104 1147 aaKnown RBP17.84■□□□□ 0.45
UPF1-201ENST00000262803 NR4A2P43354 598 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 CAV2P51636 162 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 AGAP7PQ5VUJ5 663 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 AGAP6Q5VW22 663 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 OR2T11Q8NH01 316 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 GAB3Q8WWW8 586 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 KCTD12Q96CX2 325 aaKnown RBP17.84■□□□□ 0.45
UPF1-201ENST00000262803 AGAP4Q96P64 663 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 NME7Q9Y5B8 376 aa17.84■□□□□ 0.45
UPF1-201ENST00000262803 SIGLEC6O43699 453 aa17.83■□□□□ 0.45
UPF1-201ENST00000262803 CACNG3O60359 315 aa17.83■□□□□ 0.45
UPF1-201ENST00000262803 SLC22A5O76082 557 aa17.83■□□□□ 0.45
UPF1-201ENST00000262803 POLR2IP36954 125 aaKnown RBP17.83■□□□□ 0.45
UPF1-201ENST00000262803 RACK1P63244 317 aaKnown RBP17.83■□□□□ 0.45
UPF1-201ENST00000262803 ENTPD8Q5MY95 495 aa17.83■□□□□ 0.45
UPF1-201ENST00000262803 WDR88Q6ZMY6 472 aa17.83■□□□□ 0.45
UPF1-201ENST00000262803 Q6ZSR9 355 aa17.83■□□□□ 0.45
UPF1-201ENST00000262803 SULF2Q8IWU5 870 aa17.83■□□□□ 0.45
UPF1-201ENST00000262803 KHSRPQ92945 711 aaKnown RBP eCLIP17.83■□□□□ 0.457e-7■■■□□ 17
UPF1-201ENST00000262803 TOMM40LQ969M1 308 aa17.83■□□□□ 0.45
UPF1-201ENST00000262803 MRPL38Q96DV4 380 aaKnown RBP17.83■□□□□ 0.45
UPF1-201ENST00000262803 TSSK2Q96PF2 358 aa17.83■□□□□ 0.45
UPF1-201ENST00000262803 VN1R3Q9BXE9 311 aa17.83■□□□□ 0.45
UPF1-201ENST00000262803 WDPCPO95876 746 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 GAAP10253 952 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 ACP2P11117 423 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 ERVK-25P63136 954 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 GPLD1P80108 840 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 TSPAN31Q12999 210 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 ADIPOR2Q86V24 386 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 PSMF1Q92530 271 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 ZBP1Q9H171 429 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 EGLN3Q9H6Z9 239 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 STEAP1Q9UHE8 339 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 B3GALT1Q9Y5Z6 326 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 SLC16A7O60669 478 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 PSMB5P28074 263 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 OPRD1P41143 372 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 LUMP51884 338 aaPredicted RBP17.83■□□□□ 0.44
UPF1-201ENST00000262803 IL10RAQ13651 578 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 CDKN3Q16667 212 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 CCNJQ5T5M9 372 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 UBL7Q96S82 380 aaPredicted RBP17.83■□□□□ 0.44
UPF1-201ENST00000262803 INSM2Q96T92 566 aaPredicted RBP17.83■□□□□ 0.44
UPF1-201ENST00000262803 PFDN5Q99471 154 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 MRPS2Q9Y399 296 aaKnown RBP17.83■□□□□ 0.44
UPF1-201ENST00000262803 IL2RGP31785 369 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 PTCRAQ6ISU1 281 aaPredicted RBP17.83■□□□□ 0.44
UPF1-201ENST00000262803 MOB3CQ70IA8 216 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 ZNF566Q969W8 418 aa17.83■□□□□ 0.44
UPF1-201ENST00000262803 ZNF486Q96H40 463 aaPredicted RBP17.83■□□□□ 0.44
UPF1-201ENST00000262803 ZNF334Q9HCZ1 680 aaPredicted RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms