RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MCM3APO60318 1980 aa5.74□□□□□ -1.49
SCN1A-217ENST00000637988 COL2A1P02458 1487 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-217ENST00000637988 PCDH17O14917 1159 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 LCMT2O60294 686 aaKnown RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 FZD7O75084 574 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 F10P00742 488 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 EDN3P14138 238 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ARSBP15848 533 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 IL1R2P27930 398 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TAS2R30P59541 319 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ELF3P78545 371 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SKA3Q8IX90 412 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 FAM185AQ8N0U4 392 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SLC46A1Q96NT5 459 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TAAR9Q96RI9 348 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 METTL9Q9H1A3 318 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 PRDM9Q9NQV7 894 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 FGF21Q9NSA1 209 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 GPATCH2Q9NW75 528 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 CUEDC1Q9NWM3 386 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 LAMB1P07942 1786 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SLC35F4A4IF30 521 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 LINC01553A4QN01 128 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 OR52A4PA6NMU1 304 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 PPP1R3DO95685 299 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SERPINA2P20848 420 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ITGB8P26012 769 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SEC61A1P61619 476 aaKnown RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 POU3F1Q03052 451 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF718Q3SXZ3 478 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 FAM84AQ96KN4 292 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 UHRF2Q96PU4 802 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF587Q96SQ5 575 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 FOLH1BQ9HBA9 442 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TCFL5Q9UL49 500 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ALOX12BO75342 701 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 KNG1P01042 644 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TRIM23P36406 574 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ATP4BP51164 291 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SGSHP51688 502 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 LRRC10Q5BKY1 277 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 NHSL2Q5HYW2 709 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 AADACL3Q5VUY0 350 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 NPSR1Q6W5P4 371 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 FBXW12Q6X9E4 464 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 MEX3BQ6ZN04 569 aaKnown RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 C1orf210Q8IVY1 113 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 MS4A15Q8N5U1 240 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ACOT4Q8N9L9 421 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TMBIM1Q969X1 311 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SAMD8Q96LT4 415 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 RHBDD3Q9Y3P4 386 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 PRKYO43930 277 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 CSO75390 466 aaKnown RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 MPIG6BO95866 241 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 OR8U8P0C7N1 319 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 NFYBP25208 207 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 HTR2AP28223 471 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 CTBSQ01459 385 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SPEM2Q0P670 501 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 LPCAT3Q6P1A2 487 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 CRELD2Q6UXH1 353 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TMEM151AQ8N4L1 468 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 PACRGLQ8N7B6 248 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SLC35G3Q8N808 338 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SLC37A3Q8NCC5 494 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TOMM40LQ969M1 308 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SLC22A11Q9NSA0 550 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 NOCTQ9UK39 431 aaKnown RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 MYOM1P52179 1685 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 PAPPAQ13219 1627 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 A0A0B4J203 849 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF705EA8MWA4 302 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TSPAN15O95858 294 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 GRPP07492 148 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 NELFEP18615 380 aaKnown RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 BCKDHBP21953 392 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TMEM150AQ86TG1 271 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF417Q8TAU3 575 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 GPR148Q8TDV2 347 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF516Q92618 1163 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 RTL8AQ9BWD3 113 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 DEFB127Q9H1M4 99 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 DNMT3BQ9UBC3 853 aaKnown RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF225Q9UK10 706 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 GJD2Q9UKL4 321 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ARHGEF17Q96PE2 2063 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 A0A0U1RQK1 487 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 DSCR3O14972 297 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF749O43361 778 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 UGT2B7P16662 529 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 CELP19835 753 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 PPP5CP53041 499 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 HBG1P69891 147 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 HBG2P69892 147 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 LIPIQ6XZB0 460 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 FAM57BQ71RH2 274 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 NUP37Q8NFH4 326 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 M1APQ8TC57 530 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 C10orf82Q8WW14 230 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms