RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 C8orf82Q6P1X6 216 aaPredicted RBP16.39■□□□□ 0.21
CLN3-259ENST00000637551 ARMC8Q8IUR7 673 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 CCDC71Q8IV32 467 aaPredicted RBP16.39■□□□□ 0.21
CLN3-259ENST00000637551 OR10A6Q8NH74 314 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 RNF128Q8TEB7 428 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 SMPDL3BQ92485 455 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 LRRC37BQ96QE4 947 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 NPAS1Q99742 590 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 FAM107BQ9H098 131 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 COQ10BQ9H8M1 238 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 PACSIN3Q9UKS6 424 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 F8P00451 2351 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 SETD2Q9BYW2 2564 aaPredicted RBP16.39■□□□□ 0.21
CLN3-259ENST00000637551 SHISA8B8ZZ34 492 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 MSTNO14793 375 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 SS18L1O75177 396 aaPredicted RBP16.38■□□□□ 0.21
CLN3-259ENST00000637551 TNFSF13O75888 250 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 TGM6O95932 706 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 CD8BP10966 210 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 RYKP34925 604 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 SELPLGQ14242 412 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 CAPRIN1Q14444 709 aaKnown RBP16.38■□□□□ 0.21
CLN3-259ENST00000637551 TMEM176BQ3YBM2 270 aaPredicted RBP16.38■□□□□ 0.21
CLN3-259ENST00000637551 GKAP1Q5VSY0 366 aaPredicted RBP16.38■□□□□ 0.21
CLN3-259ENST00000637551 TMPPEQ6ZT21 453 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 FAM214BQ7L5A3 538 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 CLIP4Q8N3C7 705 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 FNDC9Q8TBE3 224 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 DNAJA4Q8WW22 397 aaPredicted RBP16.38■□□□□ 0.21
CLN3-259ENST00000637551 OSTF1Q92882 214 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 DDIT4LQ96D03 193 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 RCN3Q96D15 328 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 POTEKPQ9BYX7 375 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 TRIM2Q9C040 744 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 RLIMQ9NVW2 624 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 NDE1Q9NXR1 346 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 OSGIN1Q9UJX0 560 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 SLC13A4Q9UKG4 626 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 MPDZO75970 2070 aa16.38■□□□□ 0.21
CLN3-259ENST00000637551 A0A1W2PNV4 684 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 TNFSF11O14788 317 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 EIF1BO60739 113 aaKnown RBP16.37■□□□□ 0.21
CLN3-259ENST00000637551 FZD7O75084 574 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 GOSR1O95249 250 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 MNAT1P51948 309 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 GYS2P54840 703 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 PDK3Q15120 406 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 CDSNQ15517 529 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 SPATS1Q496A3 300 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 RABL3Q5HYI8 236 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 ADGRG3Q86Y34 549 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 KIF18BQ86Y91 864 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 TREML1Q86YW5 311 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 RELL2Q8NC24 303 aaPredicted RBP16.37■□□□□ 0.21
CLN3-259ENST00000637551 OR6K3Q8NGY3 331 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 FIG4Q92562 907 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 RNASE6Q93091 150 aaKnown RBP16.37■□□□□ 0.21
CLN3-259ENST00000637551 ZNF524Q96C55 264 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 ZHX1-C8orf76Q96EF9 292 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 ZNF583Q96ND8 569 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 CCT8L2Q96SF2 557 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 ZNF559Q9BR84 538 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 SLC39A3Q9BRY0 314 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 POLR2J2Q9GZM3 115 aaKnown RBP16.37■□□□□ 0.21
CLN3-259ENST00000637551 POLR2J3Q9H1A7 115 aaKnown RBP16.37■□□□□ 0.21
CLN3-259ENST00000637551 CTPS2Q9NRF8 586 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 ABCD2Q9UBJ2 740 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 EMC9Q9Y3B6 208 aa16.37■□□□□ 0.21
CLN3-259ENST00000637551 TMED7-TICAM2A0A0A6YYA0 188 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 KDM4EB2RXH2 506 aaPredicted RBP16.36■□□□□ 0.21
CLN3-259ENST00000637551 H0YC42 278 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 AP3D1O14617 1153 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 CXCL13O43927 109 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 LGI1O95970 557 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 PNMTP11086 282 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 BMP5P22003 454 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 TACR3P29371 465 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 SFTPDP35247 375 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 RNF144AP50876 292 aaPredicted RBP16.36■□□□□ 0.21
CLN3-259ENST00000637551 AGFG1P52594 562 aaKnown RBP16.36■□□□□ 0.21
CLN3-259ENST00000637551 TPD52P55327 224 aaPredicted RBP16.36■□□□□ 0.21
CLN3-259ENST00000637551 RANBP3LQ86VV4 465 aaPredicted RBP16.36■□□□□ 0.21
CLN3-259ENST00000637551 LIX1LQ8IVB5 337 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 OR2T12Q8NG77 320 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 STK35Q8TDR2 534 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 INTS12Q96CB8 462 aaKnown RBP16.36■□□□□ 0.21
CLN3-259ENST00000637551 ZNF845Q96IR2 970 aaPredicted RBP16.36■□□□□ 0.21
CLN3-259ENST00000637551 PRRG4Q9BZD6 226 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 PCDHAC1Q9H158 963 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 PIF1Q9H611 641 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 TMEM185BQ9H7F4 350 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 BCO1Q9HAY6 547 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 FANCFQ9NPI8 374 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 KLHL9Q9P2J3 617 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 BAG5Q9UL15 447 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 TMED7Q9Y3B3 224 aa16.36■□□□□ 0.21
CLN3-259ENST00000637551 APCP25054 2843 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 FAM90A27PA6NNH2 459 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 CXCR1P25024 350 aa16.35■□□□□ 0.21
CLN3-259ENST00000637551 KCNJ5P48544 419 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms