RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CRTC2Q53ET0 693 aaPredicted RBP16.73■□□□□ 0.27
CLN3-254ENST00000637050 ABHD17BQ5VST6 288 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 MDGA2Q7Z553 956 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 ZNF227Q86WZ6 799 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 TEX47Q8TBZ9 253 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 HDAC2Q92769 488 aaKnown RBP16.73■□□□□ 0.27
CLN3-254ENST00000637050 OSTF1Q92882 214 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 SGTBQ96EQ0 304 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 TMED7-TICAM2A0A0A6YYA0 188 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 TRIM64A6NGJ6 449 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 SAGP10523 405 aaPredicted RBP16.72■□□□□ 0.27
CLN3-254ENST00000637050 FXYD6P3P58550 94 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 GINS1Q14691 196 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 KCTD21Q4G0X4 260 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 SLC25A53Q5H9E4 307 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 ARSKQ6UWY0 536 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 ADGRG3Q86Y34 549 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 RHOXF1Q8NHV9 184 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 CNIH3Q8TBE1 160 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 MED17Q9NVC6 651 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 ANKRD10Q9NXR5 420 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 ZNF226Q9NYT6 803 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 WASF3Q9UPY6 502 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 SIGLEC7Q9Y286 467 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 TMED7Q9Y3B3 224 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 PCNX3Q9H6A9 2034 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 ARGFXA6NJG6 315 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 PTP4A3O75365 173 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 SNX4O95219 450 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 GABRB1P18505 474 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 SMSP52788 366 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 FHL1Q13642 323 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 RBM48Q5RL73 367 aaKnown RBP16.72■□□□□ 0.27
CLN3-254ENST00000637050 RPL13AP3Q6NVV1 102 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 SLC27A4Q6P1M0 643 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 SLC46A3Q7Z3Q1 461 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 PLCZ1Q86YW0 608 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 GALNT16Q8N428 558 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 IQCF1Q8N6M8 205 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 OR13C2Q8NGS9 318 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 TMEM41AQ96HV5 264 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 OR52D1Q9H346 318 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 RASSF1Q9NS23 344 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 IMPAD1Q9NX62 359 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 ABI3Q9P2A4 366 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 AASSQ9UDR5 926 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 SCOCQ9UIL1 159 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 FBXL2Q9UKC9 423 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 DOCK10Q96BY6 2186 aa16.72■□□□□ 0.27
CLN3-254ENST00000637050 CPAMD8Q8IZJ3 1885 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 SNPHO15079 494 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 WBP4O75554 376 aaKnown RBP16.71■□□□□ 0.27
CLN3-254ENST00000637050 OR7A10O76100 309 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 RCBTB2O95199 551 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 P04436 131 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 PRKAR1AP10644 381 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 ZNF41P51814 821 aaPredicted RBP16.71■□□□□ 0.27
CLN3-254ENST00000637050 PLPPR5Q32ZL2 321 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 ACSM5Q6NUN0 579 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 PSD4Q8NDX1 1056 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 OR4K17Q8NGC6 315 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 FANK1Q8TC84 345 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 APH1BQ8WW43 257 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 LIPHQ8WWY8 451 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 ZNF566Q969W8 418 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 C1GALT1C1Q96EU7 318 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 NPAS1Q99742 590 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 TSSK6Q9BXA6 273 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 PTGES2Q9H7Z7 377 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 SACM1LQ9NTJ5 587 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 TBC1D23Q9NUY8 699 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 VDAC3Q9Y277 283 aa16.71■□□□□ 0.27
CLN3-254ENST00000637050 CDK2AP1O14519 115 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 SUSD5O60279 629 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 MPZL2O60487 215 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 HCN1O60741 890 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 TRIM3O75382 744 aaPredicted RBP16.7■□□□□ 0.26
CLN3-254ENST00000637050 CCNA2P20248 432 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 CD96P40200 585 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 APOBEC1P41238 236 aaKnown RBP16.7■□□□□ 0.26
CLN3-254ENST00000637050 SLC9A3P48764 834 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 CXCR4P61073 352 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 TEKQ02763 1124 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 TOP3AQ13472 1001 aaPredicted RBP16.7■□□□□ 0.26
CLN3-254ENST00000637050 BLMHQ13867 455 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 ZNF74Q16587 644 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 ZBED5Q49AG3 693 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 TMEM154Q6P9G4 183 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 POMZP3Q6PJE2 187 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 SMARCD3Q6STE5 483 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 CASP12Q6UXS9 341 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 OAFQ86UD1 273 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 MRGPRX4Q96LA9 322 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 SAMD8Q96LT4 415 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 SCNM1Q9BWG6 230 aa16.7■□□□□ 0.26
CLN3-254ENST00000637050 TRAV27A0A087WT01 109 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 TMEM72A0PK05 275 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 ZNF891A8MT65 544 aaPredicted RBP16.69■□□□□ 0.26
CLN3-254ENST00000637050 M0R129 80 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 NPIPB7O75200 414 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms