RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 CNOT9Q92600 299 aaKnown RBP14.22□□□□□ -0.13
CLN3-246ENST00000636228 APH1AQ96BI3 265 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 ZBTB9Q96C00 473 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 ROPN1LQ96C74 230 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 C20orf27Q9GZN8 174 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 FAIMQ9NVQ4 179 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 ASIC5Q9NY37 505 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 EMC3Q9P0I2 261 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 CHRNA9Q9UGM1 479 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 POU2F3Q9UKI9 436 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 SLC25A15Q9Y619 301 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 FBN3Q75N90 2809 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 CUBNO60494 3623 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 FAM234BA2RU67 622 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 M0R1B8 84 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 AP3D1O14617 1153 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 IDH2P48735 452 aaKnown RBP14.21□□□□□ -0.13
CLN3-246ENST00000636228 NUDT6P53370 316 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 NME5P56597 212 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 KCNJ10P78508 379 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 PDK3Q15120 406 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 CHI3L2Q15782 390 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 GPAT3Q53EU6 434 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 ATAD3BQ5T9A4 648 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 AGAP6Q5VW22 663 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 EMBQ6PCB8 327 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 B3GLCTQ6Y288 498 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 P2RY8Q86VZ1 359 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 FAM71CQ8NEG0 241 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 OR8J2Q8NGG1 315 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 SLC25A43Q8WUT9 341 aaPredicted RBP14.21□□□□□ -0.13
CLN3-246ENST00000636228 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.21□□□□□ -0.135e-8■■■■■ 65.3
CLN3-246ENST00000636228 RHNO1Q9BSD3 238 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 BARX1Q9HBU1 254 aaPredicted RBP14.21□□□□□ -0.13
CLN3-246ENST00000636228 SLC35A3Q9Y2D2 325 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 SPIN1Q9Y657 262 aaPredicted RBP14.21□□□□□ -0.13
CLN3-246ENST00000636228 FREM1Q5H8C1 2179 aa14.21□□□□□ -0.13
CLN3-246ENST00000636228 PRSS51A0A1B0GVH4 220 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 MRPL33O75394 65 aaKnown RBP14.2□□□□□ -0.14
CLN3-246ENST00000636228 PMS2P2O95744 297 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 CD40P25942 277 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 TTKP33981 857 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 CHI3L1P36222 383 aaPredicted RBP14.2□□□□□ -0.14
CLN3-246ENST00000636228 GABRA6Q16445 453 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 SPANXN4Q5MJ08 99 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 SAXO2Q658L1 398 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 C11orf71Q6IPW1 123 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 TMEM108Q6UXF1 575 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 GRINAQ7Z429 371 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 HIPK1Q86Z02 1210 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 ARFGAP2Q8N6H7 521 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 ZHX1-C8orf76Q96EF9 292 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 ADAD1Q96M93 576 aaKnown RBP14.2□□□□□ -0.14
CLN3-246ENST00000636228 DHRS9Q9BPW9 319 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 ROPN1BQ9BZX4 212 aaPredicted RBP14.2□□□□□ -0.14
CLN3-246ENST00000636228 GRIP2Q9C0E4 1043 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 SAP130Q9H0E3 1048 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 ROPN1Q9HAT0 212 aaPredicted RBP14.2□□□□□ -0.14
CLN3-246ENST00000636228 ASB6Q9NWX5 421 aa14.2□□□□□ -0.14
CLN3-246ENST00000636228 GOLGA8QA0A0J9YX86 632 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 TMEM72A0PK05 275 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 GOLGA8OA6NCC3 632 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 RNF212BA8MTL3 300 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 GOLGA8NF8WBI6 632 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 ANKRD28O15084 1053 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 TLX2O43763 284 aaPredicted RBP14.19□□□□□ -0.14
CLN3-246ENST00000636228 ZNF500O60304 480 aaPredicted RBP14.19□□□□□ -0.14
CLN3-246ENST00000636228 ITGA5P08648 1049 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 IMPDH2P12268 514 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 PTAFRP25105 342 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 FABP6P51161 128 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 ABCE1P61221 599 aaKnown RBP14.19□□□□□ -0.14
CLN3-246ENST00000636228 CASP8Q14790 479 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 SYPL1Q16563 259 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 SMU1Q2TAY7 513 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 CASP12Q6UXS9 341 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 ANKFN1Q8N957 763 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 WDR31Q8NA23 367 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 PIGXQ8TBF5 258 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 NEURL3Q96EH8 262 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 RADILQ96JH8 1075 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 TEX37Q96LM6 180 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 MUS81Q96NY9 551 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 SLC35A5Q9BS91 424 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 POLE3Q9NRF9 147 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.19□□□□□ -0.14
CLN3-246ENST00000636228 CBLN4Q9NTU7 201 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 TAS2R16Q9NYV7 291 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 TMEM181Q9P2C4 612 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 MARCOQ9UEW3 520 aaPredicted RBP14.19□□□□□ -0.14
CLN3-246ENST00000636228 HDGFL3Q9Y3E1 203 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 ATP23Q9Y6H3 246 aa14.19□□□□□ -0.14
CLN3-246ENST00000636228 A0A096LNT2 108 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 TMED7-TICAM2A0A0A6YYA0 188 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 A8MV72 311 aaPredicted RBP14.18□□□□□ -0.14
CLN3-246ENST00000636228 HMGN4O00479 90 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 GPR171O14626 319 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 AGR2O95994 175 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 SERPINE1P05121 402 aa14.18□□□□□ -0.14
CLN3-246ENST00000636228 DHRS4L1P0CG22 281 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms