RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CD8B2A6NJW9 211 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 SLC22A20A6NK97 555 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 TNFSF13O75888 250 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 NPPAP01160 153 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 PRKAR1BP31321 381 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 SLC1A3P43003 542 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 SIRPAP78324 504 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 EGR4Q05215 589 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 SYT14P1Q58G82 188 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 HBMQ6B0K9 141 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 ZNF787Q6DD87 383 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 DHRS4L2Q6PKH6 230 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 WDR88Q6ZMY6 472 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 MICU2Q8IYU8 434 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 FAM86B1Q8N7N1 296 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 OR2V1Q8NHB1 315 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 ST8SIA1Q92185 356 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 ADAM19Q9H013 955 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 ALG2Q9H553 416 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 TMEM181Q9P2C4 612 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 IFT52Q9Y366 437 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 TMED7Q9Y3B3 224 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 FAM220BPB1ANY3 271 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 DCTN3O75935 186 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 FESP07332 822 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 IMPDH2P12268 514 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 GP1BBP13224 206 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 EIF1P41567 113 aaKnown RBP12.07□□□□□ -0.48
LINC00540-202ENST00000616974 KCNJ5P48544 419 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 LSM11P83369 360 aaKnown RBP eCLIP12.07□□□□□ -0.48
LINC00540-202ENST00000616974 RBBP4Q09028 425 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 BCL2A1Q16548 175 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 SGCBQ16585 318 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 GRINAQ7Z429 371 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 CCDC103Q8IW40 242 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 ZNF808Q8N4W9 903 aaPredicted RBP12.07□□□□□ -0.48
LINC00540-202ENST00000616974 MEIOBQ8N635 442 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 CA5BP1Q8WTZ4 195 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 MRGBPQ9NV56 204 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 CHRNA9Q9UGM1 479 aa12.07□□□□□ -0.48
LINC00540-202ENST00000616974 ING1Q9UK53 422 aaPredicted RBP12.07□□□□□ -0.48
LINC00540-202ENST00000616974 A0A1B0GWA3 101 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 PRSS44E7EML9 344 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 LRRN3E7EW58 273 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 LGI1O95970 557 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 ME2P23368 584 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 ELK4P28324 431 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 ADH6P28332 368 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 PRDX6P30041 224 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 DIO1P49895 249 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 DLX5P56178 289 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 MYBPHQ13203 477 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 SELENBP1Q13228 472 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 CEACAM7Q14002 265 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 GNA13Q14344 377 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 ZNF239Q16600 458 aaKnown RBP12.06□□□□□ -0.48
LINC00540-202ENST00000616974 FAM91A1Q658Y4 838 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 C3orf33Q6P1S2 294 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 DEFB107AQ8IZN7 70 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 ZNF607Q96SK3 696 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 PCDHAC1Q9H158 963 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 ADA2Q9NZK5 511 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 ZNF232Q9UNY5 417 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 SH3GLB1Q9Y371 365 aa12.06□□□□□ -0.48
LINC00540-202ENST00000616974 OTOGQ6ZRI0 2925 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 IGKV1D-42A0A075B6H8 117 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 ELOVL7A1L3X0 281 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 CPSF4LA6NMK7 179 aaKnown RBP12.05□□□□□ -0.48
LINC00540-202ENST00000616974 FAM47E-STBD1D6RA91 191 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 SMAD9O15198 467 aaKnown RBP12.05□□□□□ -0.48
LINC00540-202ENST00000616974 CLDN14O95500 239 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 TFPIP10646 304 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 HTR1EP28566 365 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 NTF4P34130 210 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 GCKP35557 465 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 TIMP3P35625 211 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 KIR2DL2P43627 348 aaPredicted RBP12.05□□□□□ -0.48
LINC00540-202ENST00000616974 RGS8P57771 180 aaPredicted RBP12.05□□□□□ -0.48
LINC00540-202ENST00000616974 NRF1Q16656 503 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 HACD2Q6Y1H2 254 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 ESPNLQ6ZVH7 1005 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 CCDC80Q76M96 950 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 LUZP2Q86TE4 346 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 ATG4DQ86TL0 474 aaPredicted RBP12.05□□□□□ -0.48
LINC00540-202ENST00000616974 KRT73Q86Y46 540 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 PMM1Q92871 262 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 CLPTM1LQ96KA5 538 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 CDRT15Q96T59 188 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 ARHGDIGQ99819 225 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 RNF122Q9H9V4 155 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 CALHM2Q9HA72 323 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 KLHL13Q9P2N7 655 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 V9GYQ6 96 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 UBOX5O94941 541 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 IL2RAP01589 272 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 TMIGD3P0DMS9 266 aaPredicted RBP12.05□□□□□ -0.48
LINC00540-202ENST00000616974 CHRNB4P30926 498 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 KDELR2P33947 212 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 YAP1P46937 504 aaKnown RBP12.05□□□□□ -0.48
LINC00540-202ENST00000616974 PER3P56645 1201 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms