RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 GRINAQ7Z429 371 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 ADGRG3Q86Y34 549 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 CYP4Z2PQ8N1L4 340 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 ZNF786Q8N393 782 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 CLEC1AQ8NC01 280 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 FAM81AQ8TBF8 368 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 THAP4Q8WY91 577 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 ST8SIA1Q92185 356 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 SLC25A19Q9HC21 320 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 SIGLEC7Q9Y286 467 aa12.95□□□□□ -0.34
USP39-220ENST00000613444 MED12Q93074 2177 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 LRRN3E7EW58 273 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 WBP4O75554 376 aaKnown RBP12.94□□□□□ -0.34
USP39-220ENST00000613444 POLR2HP52434 150 aaKnown RBP12.94□□□□□ -0.34
USP39-220ENST00000613444 TPD52P55327 224 aaPredicted RBP12.94□□□□□ -0.34
USP39-220ENST00000613444 SLC25A53Q5H9E4 307 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 C6orf141Q5SZD1 244 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 BROXQ5VW32 411 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 SLC46A3Q7Z3Q1 461 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 CCDC103Q8IW40 242 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 GPALPP1Q8IXQ4 340 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 IQCF1Q8N6M8 205 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 OR13C2Q8NGS9 318 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 RHOXF1Q8NHV9 184 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 ENKD1Q9H0I2 346 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 ING2Q9H160 280 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 MED17Q9NVC6 651 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 MYRFQ9Y2G1 1151 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 CDH10Q9Y6N8 788 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 ARGFXA6NJG6 315 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 EFCAB9A8MZ26 197 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 M0R129 80 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 NPIPB7O75200 414 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 SMIM18P0DKX4 95 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 EFNB1P98172 346 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 GINS1Q14691 196 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 PLPPR5Q32ZL2 321 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 CRTC2Q53ET0 693 aaPredicted RBP12.94□□□□□ -0.34
USP39-220ENST00000613444 CDK20Q8IZL9 346 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 TMEM234Q8WY98 164 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 HDAC2Q92769 488 aaKnown RBP12.94□□□□□ -0.34
USP39-220ENST00000613444 SCNM1Q9BWG6 230 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 RASSF1Q9NS23 344 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 WDR70Q9NW82 654 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 TEKT2Q9UIF3 430 aa12.94□□□□□ -0.34
USP39-220ENST00000613444 PIEZO1Q92508 2521 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 TMED7-TICAM2A0A0A6YYA0 188 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 A0A0G2JMM0 328 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 A0A1W2PPB8 328 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 A0A1W2PRS3 328 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 ZC3H12DA2A288 527 aaKnown RBP12.93□□□□□ -0.34
USP39-220ENST00000613444 KIR3DP1A8MWS1 328 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 SNPHO15079 494 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 PRKAR1AP10644 381 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 CD96P40200 585 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 CYB561P49447 251 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 LTBQ06643 244 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 KCTD21Q4G0X4 260 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 PLCZ1Q86YW0 608 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 GALNT16Q8N428 558 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 LRRC17Q8N6Y2 441 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 OR4Q3Q8NH05 313 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 POC1BQ8TC44 478 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 LIPHQ8WWY8 451 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 FGF11Q92914 225 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 KTI12Q96EK9 354 aaPredicted RBP12.93□□□□□ -0.34
USP39-220ENST00000613444 SGTBQ96EQ0 304 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 C1GALT1C1Q96EU7 318 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 YTHDF1Q9BYJ9 559 aaKnown RBP12.93□□□□□ -0.34
USP39-220ENST00000613444 OR52D1Q9H346 318 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 TMED7Q9Y3B3 224 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 PCDHGB6Q9Y5F9 930 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 TRAV27A0A087WT01 109 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 TMEM72A0PK05 275 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 HTR3EA5X5Y0 456 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 G3V3Y1 287 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 EFSO43281 561 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 TRIM3O75382 744 aaPredicted RBP12.93□□□□□ -0.34
USP39-220ENST00000613444 NEURL1O76050 574 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 SAGP10523 405 aaPredicted RBP12.93□□□□□ -0.34
USP39-220ENST00000613444 CRHBPP24387 322 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 CXCR1P25024 350 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 HTR3AP46098 478 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 TUBA3CQ13748 450 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 BLMHQ13867 455 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 ZNF74Q16587 644 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 ABHD17BQ5VST6 288 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 TUBA3EQ6PEY2 450 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 THSD4Q6ZMP0 1018 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 PSD4Q8NDX1 1056 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 TEX47Q8TBZ9 253 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 OSTF1Q92882 214 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 TMEM41AQ96HV5 264 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 SAMD8Q96LT4 415 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 MCCC2Q9HCC0 563 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 HHATLQ9HCP6 504 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 IL20RAQ9UHF4 553 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 VDAC3Q9Y277 283 aa12.93□□□□□ -0.34
USP39-220ENST00000613444 CEP295Q9C0D2 2601 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms