RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 FUZQ9BT04 418 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 TMEM43Q9BTV4 400 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 BDH2Q9BUT1 245 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 SLC6A15Q9H2J7 730 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 LDAHQ9H6V9 325 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 NTN4Q9HB63 628 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 PLSCR2Q9NRY7 297 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 VNN3Q9NY84 501 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 SLC6A5Q9Y345 797 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 ZNF337Q9Y3M9 751 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 SAMHD1Q9Y3Z3 626 aaKnown RBP12.96□□□□□ -0.33
UPF1-211ENST00000600868 LYVE1Q9Y5Y7 322 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 SPIN1Q9Y657 262 aaPredicted RBP12.96□□□□□ -0.33
UPF1-211ENST00000600868 AP4B1Q9Y6B7 739 aa12.96□□□□□ -0.33
UPF1-211ENST00000600868 CACNA1BQ00975 2339 aa12.96□□□□□ -0.34
UPF1-211ENST00000600868 BOD1L1Q8NFC6 3051 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 TRBV4-1A0A0J9YWV2 114 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 A8MVM7 634 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 NPIPA5E9PKD4 350 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 TNFRSF11BO00300 401 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 ACTL6AO96019 429 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 IL11P20809 199 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 CLK1P49759 484 aaKnown RBP12.95□□□□□ -0.34
UPF1-211ENST00000600868 KRTCAP3Q53RY4 240 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 FGD3Q5JSP0 725 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 DCST1Q5T197 706 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 HMBOX1Q6NT76 420 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 C3orf33Q6P1S2 294 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 TTC33Q6PID6 262 aaPredicted RBP12.95□□□□□ -0.34
UPF1-211ENST00000600868 POMZP3Q6PJE2 187 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 C5orf46Q6UWT4 87 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 RNF113BQ8IZP6 322 aaKnown RBP12.95□□□□□ -0.34
UPF1-211ENST00000600868 PQLC1Q8N2U9 271 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 OR4C15Q8NGM1 316 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 OR52J3Q8NH60 311 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 SLC7A13Q8TCU3 470 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 STK35Q8TDR2 534 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 FAR1Q8WVX9 515 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 TMEM239Q8WW34 195 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 ACOT11Q8WXI4 607 aaPredicted RBP12.95□□□□□ -0.34
UPF1-211ENST00000600868 SNRNP40Q96DI7 357 aaKnown RBP12.95□□□□□ -0.34
UPF1-211ENST00000600868 GPR137Q96N19 417 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 ALPK1Q96QP1 1244 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 PKP2Q99959 881 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 SLC19A3Q9BZV2 496 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 TSPAN10Q9H1Z9 355 aaPredicted RBP12.95□□□□□ -0.34
UPF1-211ENST00000600868 DCLRE1BQ9H816 532 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 STOML1Q9UBI4 398 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 NPIPA1Q9UND3 350 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 LIPGQ9Y5X9 500 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 EPG5Q9HCE0 2579 aa12.95□□□□□ -0.34
UPF1-211ENST00000600868 IGKV1D-42A0A075B6H8 117 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 A0A087WUU8 490 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 SH3PXD2BA1X283 911 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 GJE1A6NN92 205 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 AQP7O14520 342 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 MGRN1O60291 552 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 NPIPB7O75200 414 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 IGF2P01344 180 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 BMP7P18075 431 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 CCNA2P20248 432 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 FPR1P21462 350 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 DNAJA1P31689 397 aaKnown RBP12.94□□□□□ -0.34
UPF1-211ENST00000600868 LHX2P50458 406 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 RIPK1Q13546 671 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 RCN1Q15293 331 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 BCL2A1Q16548 175 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 VASNQ6EMK4 673 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 PODNL1Q6PEZ8 512 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 ZNF730Q6ZMV8 503 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 AMIGO2Q86SJ2 522 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 TMEM255BQ8WV15 326 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 ABTB1Q969K4 478 aaPredicted RBP12.94□□□□□ -0.34
UPF1-211ENST00000600868 DDIT4LQ96D03 193 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 NRBF2Q96F24 287 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 SLX1AQ9BQ83 275 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 POTEKPQ9BYX7 375 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 EXO5Q9H790 373 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 C6orf203Q9P0P8 240 aaPredicted RBP12.94□□□□□ -0.34
UPF1-211ENST00000600868 TMCC3Q9ULS5 477 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 MED31Q9Y3C7 131 aa12.94□□□□□ -0.34
UPF1-211ENST00000600868 HTR3EA5X5Y0 456 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 TTLL8A6PVC2 850 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 H0Y3Z8 333 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 H3BML4 177 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 E2F6O75461 281 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 WISP2O76076 250 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 BAG2O95816 211 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 PEPDP12955 493 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 ANPEPP15144 967 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 POU3F2P20265 443 aaPredicted RBP12.93□□□□□ -0.34
UPF1-211ENST00000600868 TDGF1P3P51864 188 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 UGT2B15P54855 530 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 EGR4Q05215 589 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 FOXD4Q12950 439 aaPredicted RBP12.93□□□□□ -0.34
UPF1-211ENST00000600868 SEC23BQ15437 767 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 EXOC3L2Q2M3D2 409 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 TMEM176BQ3YBM2 270 aaPredicted RBP12.93□□□□□ -0.34
UPF1-211ENST00000600868 SYT14P1Q58G82 188 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 ARHGAP11AQ6P4F7 1023 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms