RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 EIF1BO60739 113 aaKnown RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 RASAL1O95294 804 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 PPP1R3DO95685 299 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 RAB36O95755 333 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 MT-ND5P03915 603 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 QPRTQ15274 297 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 LRRC17Q8N6Y2 441 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 BCORP1Q8N888 145 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 FAM181AQ8N9Y4 354 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 PNLDC1Q8NA58 520 aaKnown RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 TAMM41Q96BW9 452 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 SLC35A4Q96G79 324 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 CRELD1Q96HD1 420 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 PSD2Q9BQI7 771 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 TTYH2Q9BSA4 534 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 ENKD1Q9H0I2 346 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 TMEM9Q9P0T7 183 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 GPR179Q6PRD1 2367 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 C2orf72A6NCS6 295 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 SAGE2PA6NJ88 616 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 SERPINA7P05543 415 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 S1PR1P21453 382 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 FKBP2P26885 142 aaKnown RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 NAA10P41227 235 aaPredicted RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 CARD18P57730 90 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 POU4F2Q12837 409 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 IL10RAQ13651 578 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 ARHGAP11BQ3KRB8 267 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 ZNF793Q6ZN11 406 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 DPPA2Q7Z7J5 298 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 PSD4Q8NDX1 1056 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 CPNE2Q96FN4 548 aaPredicted RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 CHCHD6Q9BRQ6 235 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 LHPPQ9H008 270 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 ARMC1Q9NVT9 282 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 EXOSC1Q9Y3B2 195 aaKnown RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 CENPBD1B2RD01 187 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 PDCD5O14737 125 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 KHDRBS3O75525 346 aaKnown RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 MRPL3P09001 348 aaKnown RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 C7P10643 843 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 MMP11P24347 488 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 LCN1P31025 176 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 P2RX1P51575 399 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 TAS2R43P59537 309 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 MAP4K2Q12851 820 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 GPR139Q6DWJ6 353 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 ADGRG5Q8IZF4 528 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 RNF113BQ8IZP6 322 aaKnown RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 TMEM80Q96HE8 168 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 TM9SF2Q99805 663 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 ABCB10Q9NRK6 738 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 TAS2R7Q9NYW3 318 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 COQ3Q9NZJ6 369 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 SLC6A5Q9Y345 797 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 CORINQ9Y5Q5 1042 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 IER3IP1Q9Y5U9 82 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 ZNF646O15015 1829 aaPredicted RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 A0A1B0GWA3 101 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 FRG2CA6NGY1 282 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 H0YAE9 185 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 UPK1AO00322 258 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 KCNK2O95069 426 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 GGT2P36268 569 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 RPS5P46782 204 aaKnown RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 UCNP55089 124 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 OR12D2P58182 307 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 MC2RQ01718 297 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 MALLQ13021 153 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 CHAF1BQ13112 559 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 BLMHQ13867 455 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 JMJD6Q6NYC1 403 aaPredicted RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 LANCL3Q6ZV70 420 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 PRSS41Q7RTY9 318 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 GRINAQ7Z429 371 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 SATL1Q86VE3 508 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 OR9Q2Q8NGE9 314 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 FGF11Q92914 225 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 NUDT9Q9BW91 350 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 WWTR1Q9GZV5 400 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 PCYT1BQ9Y5K3 369 aaPredicted RBP9.08□□□□□ -0.96
LIG3-216ENST00000593099 CDH10Q9Y6N8 788 aa9.08□□□□□ -0.96
LIG3-216ENST00000593099 HTR3EA5X5Y0 456 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 DPM1O60762 260 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 ECDO95905 644 aaPredicted RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 PPIAP62937 165 aaKnown RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 DEFA5Q01523 94 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 POU3F1Q03052 451 aaPredicted RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 ZIC1Q15915 447 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 HSD17B12Q53GQ0 312 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 OR5W2Q8NH69 310 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 S100ZQ8WXG8 99 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 CNOT9Q92600 299 aaKnown RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 SPACA9Q96E40 222 aaPredicted RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 APMAPQ9HDC9 416 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 NGBQ9NPG2 151 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 FBXO8Q9NRD0 319 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 IL20RAQ9UHF4 553 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 TCFL5Q9UL49 500 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 WIF1Q9Y5W5 379 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms