RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 FBXW5Q969U6 566 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 SLC38A1Q9H2H9 487 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.68□□□□□ -0.38
VMP1-206ENST00000587945 AIG1Q9NVV5 245 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 CHRNA9Q9UGM1 479 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 BTNL2Q9UIR0 455 aa12.68□□□□□ -0.38
VMP1-206ENST00000587945 MAGED1Q9Y5V3 778 aaPredicted RBP12.68□□□□□ -0.38
VMP1-206ENST00000587945 ABCA2Q9BZC7 2435 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 RAI1Q7Z5J4 1906 aaPredicted RBP12.67□□□□□ -0.38
VMP1-206ENST00000587945 RAMP1O60894 148 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 DANCRP0C864 163 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 KITP10721 976 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 EPHA3P29320 983 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 CDKN1AP38936 164 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 WDR4P57081 412 aaKnown RBP12.67□□□□□ -0.38
VMP1-206ENST00000587945 OR2B6P58173 313 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 HPCAP84074 193 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 FAPQ12884 760 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 PPA1Q15181 289 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 ZNF672Q499Z4 452 aaPredicted RBP12.67□□□□□ -0.38
VMP1-206ENST00000587945 COX20Q5RI15 118 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 HHATQ5VTY9 493 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 AP1ARQ63HQ0 302 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 OGFOD2Q6N063 350 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 ZNF621Q6ZSS3 439 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 GRINAQ7Z429 371 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 CCDC103Q8IW40 242 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 LRRC34Q8IZ02 419 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 MAPK1IP1LQ8NDC0 245 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 OR52E6Q96RD3 313 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 PANX1Q96RD7 426 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 EXOSC3Q9NQT5 275 aaKnown RBP12.67□□□□□ -0.38
VMP1-206ENST00000587945 NPAP1Q9NZP6 1156 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 RAB21Q9UL25 225 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 NOSIPQ9Y314 301 aaKnown RBP12.67□□□□□ -0.38
VMP1-206ENST00000587945 SPIN1Q9Y657 262 aaPredicted RBP12.67□□□□□ -0.38
VMP1-206ENST00000587945 CSPG4Q6UVK1 2322 aa12.67□□□□□ -0.38
VMP1-206ENST00000587945 ANK3Q12955 4377 aaKnown RBP12.67□□□□□ -0.38
VMP1-206ENST00000587945 DSCAMO60469 2012 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 IGKV3D-15A0A087WSY6 115 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 ZNF716A6NP11 495 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 OVOL3O00110 214 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 TMCC2O75069 709 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 PGRP06401 933 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 GGT1P19440 569 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 COX5AP20674 150 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 PGGHGQ32M88 737 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 SPATA19Q7Z5L4 167 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 KIRREL3Q8IZU9 778 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 UBE2J2Q8N2K1 259 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 ZNF433Q8N7K0 673 aaPredicted RBP12.66□□□□□ -0.38
VMP1-206ENST00000587945 OIT3Q8WWZ8 545 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 GTPBP3Q969Y2 492 aaKnown RBP12.66□□□□□ -0.38
VMP1-206ENST00000587945 ZHX1-C8orf76Q96EF9 292 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 TRNT1Q96Q11 434 aaKnown RBP12.66□□□□□ -0.38
VMP1-206ENST00000587945 USB1Q9BQ65 265 aaKnown RBP12.66□□□□□ -0.38
VMP1-206ENST00000587945 TRIM2Q9C040 744 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 EMC3Q9P0I2 261 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 LIPT1Q9Y234 373 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 HDGFL3Q9Y3E1 203 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 GPR45Q9Y5Y3 372 aa12.66□□□□□ -0.38
VMP1-206ENST00000587945 TMED7-TICAM2A0A0A6YYA0 188 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 A0A1W2PP18 115 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 A0A1W2PR80 420 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 TMEM120BA0PK00 339 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 TMEM72A0PK05 275 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 AGAP5A6NIR3 686 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 OR5H1A6NKK0 313 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 SHISA9B4DS77 424 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 INAFM1C9JVW0 142 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 NDUFS7O75251 213 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 RAD51DO75771 328 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 PGM3O95394 542 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 PMS2P2O95744 297 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 NR2F1P10589 423 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 PTNP21246 168 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 FOXG1P55316 489 aaPredicted RBP12.65□□□□□ -0.38
VMP1-206ENST00000587945 VEZF1Q14119 521 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 PDK3Q15120 406 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 CLEC12BQ2HXU8 276 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 TIMM23BQ5SRD1 257 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 FBXW9Q5XUX1 488 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 NXNQ6DKJ4 435 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 DNAJC14Q6Y2X3 702 aaPredicted RBP12.65□□□□□ -0.38
VMP1-206ENST00000587945 LRRC74BQ6ZQY2 392 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 PRIMA1Q86XR5 153 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 TRIML2Q8N7C3 387 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 OR52N5Q8NH56 324 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 APH1AQ96BI3 265 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 MUCL1Q96DR8 90 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 ZBTB18Q99592 522 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 SLC6A13Q9NSD5 602 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 OSGIN1Q9UJX0 560 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 TMED7Q9Y3B3 224 aa12.65□□□□□ -0.38
VMP1-206ENST00000587945 NSD1Q96L73 2696 aaPredicted RBP12.64□□□□□ -0.39
VMP1-206ENST00000587945 CIB4A0PJX0 185 aa12.64□□□□□ -0.39
VMP1-206ENST00000587945 ZC3H12DA2A288 527 aaKnown RBP12.64□□□□□ -0.39
VMP1-206ENST00000587945 CCT8L1PA6NM43 557 aa12.64□□□□□ -0.39
VMP1-206ENST00000587945 RNF223E7ERA6 249 aa12.64□□□□□ -0.39
VMP1-206ENST00000587945 ABCD4O14678 606 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms