RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 NPIPB7O75200 414 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 ADAP00813 363 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 HPNP05981 417 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 RFPL3SP0C7P2 107 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 PRKACGP22612 351 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 ELK4P28324 431 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 OMPP47874 163 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 EGR4Q05215 589 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 PRKCDQ05655 676 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 MERTKQ12866 999 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 LRRC36Q1X8D7 754 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 LINC00303Q3SY05 128 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 ELOA3BQ3SY89 546 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 OTUD3Q5T2D3 398 aaPredicted RBP14.61□□□□□ -0.07
SS18-211ENST00000578954 KDM4DQ6B0I6 523 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 TTC33Q6PID6 262 aaPredicted RBP14.61□□□□□ -0.07
SS18-211ENST00000578954 C5orf46Q6UWT4 87 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 ZNF730Q6ZMV8 503 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 ZER1Q7Z7L7 766 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 NRMQ8IXM6 262 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 RBMXL3Q8N7X1 1067 aaKnown RBP14.61□□□□□ -0.07
SS18-211ENST00000578954 ELOA3Q8NG57 546 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 DNAJC9Q8WXX5 260 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 ABHD17AQ96GS6 310 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 FEVQ99581 238 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 ADNPQ9H2P0 1102 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 MEPEQ9NQ76 525 aaPredicted RBP14.61□□□□□ -0.07
SS18-211ENST00000578954 B4GALT7Q9UBV7 327 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 TMEFF2Q9UIK5 374 aaPredicted RBP14.61□□□□□ -0.07
SS18-211ENST00000578954 DKKL1Q9UK85 242 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 TMED7Q9Y3B3 224 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 MED31Q9Y3C7 131 aa14.61□□□□□ -0.07
SS18-211ENST00000578954 TMEM72A0PK05 275 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 K7EM74 188 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 OR10H3O60404 316 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 FZD7O75084 574 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 HK1P19367 917 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 CXCR1P25024 350 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 IFNGR2P38484 337 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 DAPP51397 102 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 B3GALT5-AS1P59052 145 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 ZNF169Q14929 603 aaPredicted RBP14.6□□□□□ -0.07
SS18-211ENST00000578954 RPUSD3Q6P087 351 aaKnown RBP14.6□□□□□ -0.07
SS18-211ENST00000578954 CD300LDQ6UXZ3 194 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 TMEM251Q8N6I4 163 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 AQP11Q8NBQ7 271 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 FAM98AQ8NCA5 519 aaKnown RBP14.6□□□□□ -0.07
SS18-211ENST00000578954 PIGXQ8TBF5 258 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 STK35Q8TDR2 534 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 RDH12Q96NR8 316 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 VCXQ9H320 206 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 SMURF2Q9HAU4 748 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 KRCC1Q9NPI7 259 aaPredicted RBP14.6□□□□□ -0.07
SS18-211ENST00000578954 CHRNA9Q9UGM1 479 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 TMEM5Q9Y2B1 443 aa14.6□□□□□ -0.07
SS18-211ENST00000578954 DLGAP1O14490 977 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 EFNA2O43921 213 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 SUSD5O60279 629 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 PIP5K1CO60331 668 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 GASTP01350 101 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 FPR3P25089 353 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 FKBP2P26885 142 aaKnown RBP14.59□□□□□ -0.07
SS18-211ENST00000578954 GDF1P27539 372 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 GSSP48637 474 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 SELENBP1Q13228 472 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 INAQ16352 499 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 ANKRD34AQ69YU3 496 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 TMPRSS11FQ6ZWK6 438 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 RRM2BQ7LG56 351 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 PRICKLE2Q7Z3G6 844 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.59□□□□□ -0.07
SS18-211ENST00000578954 SLC22A16Q86VW1 577 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 PARP8Q8N3A8 854 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 FAM83FQ8NEG4 500 aaPredicted RBP14.59□□□□□ -0.07
SS18-211ENST00000578954 OR6S1Q8NH40 331 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 PFN4Q8NHR9 129 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 RNF217Q8TC41 542 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 SLC25A43Q8WUT9 341 aaPredicted RBP14.59□□□□□ -0.07
SS18-211ENST00000578954 LIPHQ8WWY8 451 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 TP53TG5Q9Y2B4 290 aa14.59□□□□□ -0.07
SS18-211ENST00000578954 NCKAP5O14513 1909 aa14.58□□□□□ -0.07
SS18-211ENST00000578954 MGAQ8IWI9 3026 aa14.58□□□□□ -0.07
SS18-211ENST00000578954 OR2M5A3KFT3 312 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 A8MVM7 634 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 SHISA8B8ZZ34 492 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 FOXK1P85037 733 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 PLGLB1Q02325 96 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 FOXD4Q12950 439 aaPredicted RBP14.58□□□□□ -0.08
SS18-211ENST00000578954 TSPAN31Q12999 210 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 RFX4Q33E94 735 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 C3orf33Q6P1S2 294 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 FAM109AQ8N4B1 249 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 ATG16L2Q8NAA4 619 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 MAGEE2Q8TD90 523 aaPredicted RBP14.58□□□□□ -0.08
SS18-211ENST00000578954 GNPDA2Q8TDQ7 276 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 GPA33Q99795 319 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 NIPSNAP1Q9BPW8 284 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 PIGQQ9BRB3 760 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 POTEKPQ9BYX7 375 aa14.58□□□□□ -0.08
SS18-211ENST00000578954 ZDHHC11Q9H8X9 412 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms