RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 UBE2J2Q8N2K1 259 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 PIAS4Q8N2W9 510 aaPredicted RBP18.55■□□□□ 0.56
VPS53-216ENST00000574029 APH1AQ96BI3 265 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 ZHX1-C8orf76Q96EF9 292 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 ZIM3Q96PE6 472 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 DHRS9Q9BPW9 319 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 CACNG6Q9BXT2 260 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 OR51I1Q9H343 314 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 CTPS2Q9NRF8 586 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 NOP53Q9NZM5 478 aaKnown RBP18.55■□□□□ 0.56
VPS53-216ENST00000574029 CHRNA9Q9UGM1 479 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 SLC35A3Q9Y2D2 325 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 ATRQ13535 2644 aa18.55■□□□□ 0.56
VPS53-216ENST00000574029 RNF212BA8MTL3 300 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 GPR171O14626 319 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 ANKRD28O15084 1053 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 DNPH1O43598 174 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 BCAS1O75363 584 aaPredicted RBP18.54■□□□□ 0.56
VPS53-216ENST00000574029 TFPIP10646 304 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 CD40P25942 277 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 ZNF83P51522 516 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 SLC16A1P53985 500 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 SPOCK1Q08629 439 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 SMU1Q2TAY7 513 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 TNFAIP8L3Q5GJ75 292 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 KLHL17Q6TDP4 642 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 OR8J2Q8NGG1 315 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 OR52N5Q8NH56 324 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 PIGXQ8TBF5 258 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 ARL5BQ96KC2 179 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 MUS81Q96NY9 551 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 SAP130Q9H0E3 1048 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 POLE3Q9NRF9 147 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 ASB6Q9NWX5 421 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 TAS2R16Q9NYV7 291 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 MALT1Q9UDY8 824 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 HDGFL3Q9Y3E1 203 aa18.54■□□□□ 0.56
VPS53-216ENST00000574029 CIB4A0PJX0 185 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 RGS16O15492 202 aaPredicted RBP18.53■□□□□ 0.56
VPS53-216ENST00000574029 AGR2O95994 175 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 BPGMP07738 259 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 DHRS4L1P0CG22 281 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 OR12D1P0DN82 309 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 FKBP2P26885 142 aaKnown RBP18.53■□□□□ 0.56
VPS53-216ENST00000574029 CLK1P49759 484 aaKnown RBP18.53■□□□□ 0.56
VPS53-216ENST00000574029 CASP9P55211 416 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 DSCR9P59020 149 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 GABRA6Q16445 453 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 CHRFAM7AQ494W8 412 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 SLC22A25Q6T423 547 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 GRINAQ7Z429 371 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 PHC2Q8IXK0 858 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 MUC15Q8N387 334 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 OR4A15Q8NGL6 344 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 ZNF563Q8TA94 476 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 PCDHGB4Q9UN71 923 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 WDR45Q9Y484 360 aa18.53■□□□□ 0.56
VPS53-216ENST00000574029 YLPM1P49750 1951 aaKnown RBP18.53■□□□□ 0.56
VPS53-216ENST00000574029 CUBNO60494 3623 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 FAM234BA2RU67 622 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 ELOA3DA6NLF2 546 aaPredicted RBP18.52■□□□□ 0.56
VPS53-216ENST00000574029 CCT8L1PA6NM43 557 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 TYROBPO43914 113 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 SCN2BO60939 215 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 CHRNEQ04844 493 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 LOXL1Q08397 574 aaPredicted RBP18.52■□□□□ 0.56
VPS53-216ENST00000574029 FUT5Q11128 374 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 ELOA3BQ3SY89 546 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 CEP85LQ5SZL2 805 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 C6orf52Q5T4I8 152 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 ATAD3BQ5T9A4 648 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 OR7E24Q6IFN5 339 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 CLEC2AQ6UVW9 174 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 B3GLCTQ6Y288 498 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 FRRS1Q6ZNA5 592 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 ADGRG3Q86Y34 549 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 FBXL14Q8N1E6 418 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 ELOA3Q8NG57 546 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 XAGE5Q8WWM1 108 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 RAB8BQ92930 207 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 ROPN1LQ96C74 230 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 TNFRSF13CQ96RJ3 184 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 SSU72Q9NP77 194 aaKnown RBP18.52■□□□□ 0.56
VPS53-216ENST00000574029 EXOSC3Q9NQT5 275 aaKnown RBP18.52■□□□□ 0.56
VPS53-216ENST00000574029 POU2F3Q9UKI9 436 aa18.52■□□□□ 0.56
VPS53-216ENST00000574029 A0A1W2PR80 420 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 MRPL33O75394 65 aaKnown RBP18.51■□□□□ 0.55
VPS53-216ENST00000574029 ITGA5P08648 1049 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 CREB1P16220 341 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 UQCRC2P22695 453 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 RYKP34925 604 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 FOXG1P55316 489 aaPredicted RBP18.51■□□□□ 0.55
VPS53-216ENST00000574029 H3F3AP84243 136 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 PLAURQ03405 335 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 TMEM249Q2WGJ8 235 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 SAXO2Q658L1 398 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 CCDC103Q8IW40 242 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 ZG16BQ96DA0 208 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 DNAJA3Q96EY1 480 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 AMBRA1Q9C0C7 1298 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms