RNA–Protein interactions for RNA: ENST00000572043.5

CTDNEP1-207, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3 BASIC

Gene CTDNEP1, Length 857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-207ENST00000572043 DSPPQ9NZW4 1301 aa15.8■□□□□ 0.12
CTDNEP1-207ENST00000572043 ATE1O95260 518 aa15.8■□□□□ 0.12
CTDNEP1-207ENST00000572043 ADAP00813 363 aa15.8■□□□□ 0.12
CTDNEP1-207ENST00000572043 UQCRBP14927 111 aa15.8■□□□□ 0.12
CTDNEP1-207ENST00000572043 HOXB9P17482 250 aaPredicted RBP15.8■□□□□ 0.12
CTDNEP1-207ENST00000572043 SPNS3Q6ZMD2 512 aa15.8■□□□□ 0.12
CTDNEP1-207ENST00000572043 CLIP4Q8N3C7 705 aa15.8■□□□□ 0.12
CTDNEP1-207ENST00000572043 FOXC2Q99958 501 aa15.8■□□□□ 0.12
CTDNEP1-207ENST00000572043 BCO1Q9HAY6 547 aa15.8■□□□□ 0.12
CTDNEP1-207ENST00000572043 DCHS2Q6V1P9 2916 aa15.8■□□□□ 0.12
CTDNEP1-207ENST00000572043 CDHR4A6H8M9 788 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 C5orf58C9J3I9 102 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 PRG2P13727 222 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 EDNRAP25101 427 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 HTR3AP46098 478 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 SF3A3Q12874 501 aaKnown RBP eCLIP15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 LARS2Q15031 903 aaKnown RBP15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 MTDHQ86UE4 582 aaKnown RBP15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 C10orf111Q8N326 155 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 PMM1Q92871 262 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 S100PBPQ96BU1 408 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 ZHX1-C8orf76Q96EF9 292 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 RAD21L1Q9H4I0 556 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 UBTD1Q9HAC8 227 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 GP6Q9HCN6 339 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 A4GALTQ9NPC4 353 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 SLC52A3Q9NQ40 469 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 THUMPD1Q9NXG2 353 aaKnown RBP15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 VAPAQ9P0L0 249 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 ZNF232Q9UNY5 417 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 GPR52Q9Y2T5 361 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 HDGFL3Q9Y3E1 203 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 MYO9AB2RTY4 2548 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 LRBAP50851 2863 aa15.79■□□□□ 0.12
CTDNEP1-207ENST00000572043 A0A0G2JND7 137 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 A0A0G2JPF8 293 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 ZC3H12DA2A288 527 aaKnown RBP15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 HNRNPCL2B2RXH8 293 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 ZNF814B7Z6K7 855 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 HNRNPCL3B7ZW38 293 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 FRS3O43559 492 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 HNRNPCL1O60812 293 aaKnown RBP15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 EDF1O60869 148 aaKnown RBP15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 RAMP1O60894 148 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 GCM2O75603 506 aaPredicted RBP15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 HNRNPCL4P0DMR1 293 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 PPP3CBP16298 524 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 IL32P24001 234 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 ACAA2P42765 397 aaKnown RBP15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 SLC1A3P43003 542 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 ATP4BP51164 291 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 FADDQ13158 208 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 DEFB113Q30KQ7 82 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 ZNF311Q5JNZ3 666 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 LRIF1Q5T3J3 769 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 GCNT6Q5T4J0 391 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 CCDC103Q8IW40 242 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 ZNF440Q8IYI8 595 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 GABRG1Q8N1C3 465 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 NFKBIDQ8NI38 313 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 DDIT4LQ96D03 193 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 TACO1Q9BSH4 297 aaKnown RBP15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 CHST2Q9Y4C5 530 aa15.78■□□□□ 0.12
CTDNEP1-207ENST00000572043 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 PGM3O95394 542 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 PMS2P2O95744 297 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 IGHV3-9P01782 118 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 THBS1P07996 1170 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 IMPDH2P12268 514 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 PSMB1P20618 241 aaKnown RBP15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 HOXC5Q00444 222 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 BNIP2Q12982 314 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 SFRP5Q5T4F7 317 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 RNF220Q5VTB9 566 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 ABLIM2Q6H8Q1 611 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 GALNT5Q7Z7M9 940 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 SERPINA11Q86U17 422 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 ZNF100Q8IYN0 542 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 STEAP2Q8NFT2 490 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 BBS10Q8TAM1 723 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 SPATA9Q9BWV2 254 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 IKZF5Q9H5V7 419 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 TMEM181Q9P2C4 612 aa15.77■□□□□ 0.12
CTDNEP1-207ENST00000572043 POLQO75417 2590 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 A0A1W2PP18 115 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 ZNF724A8MTY0 619 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 FAAHO00519 579 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 KLF4O43474 513 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 LYZL6O75951 148 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 CD53P19397 219 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 FPR1P21462 350 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 CXCR1P25024 350 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 FKBP2P26885 142 aaKnown RBP15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 LOXP28300 417 aaPredicted RBP15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 OR3A2P47893 321 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 CLK1P49759 484 aaKnown RBP15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 COPZ1P61923 177 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 BEX5Q5H9J7 111 aa15.76■□□□□ 0.11
CTDNEP1-207ENST00000572043 UBE2J2Q8N2K1 259 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms