RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 MS4A15Q8N5U1 240 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 OR52E2Q8NGJ4 325 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 ZFAND1Q8TCF1 268 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 ERMAPQ96PL5 475 aaPredicted RBP20.96■□□□□ 0.95
VPS53-211ENST00000571805 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.96■□□□□ 0.95
VPS53-211ENST00000571805 SLC28A3Q9HAS3 691 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 GALNT9Q9HCQ5 603 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 MAU2Q9Y6X3 613 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 ANKRD34BA5PLL1 514 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 HYAL3O43820 417 aaPredicted RBP20.96■□□□□ 0.95
VPS53-211ENST00000571805 TNFP01375 233 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 AHCYP23526 432 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 SRSF5Q13243 272 aaKnown RBP20.96■□□□□ 0.95
VPS53-211ENST00000571805 FAM53BQ14153 422 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 CCDC3Q9BQI4 270 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 MCUBQ9NWR8 336 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 ICAM5Q9UMF0 924 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 HS3ST3A1Q9Y663 406 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 TGFBR3LH3BV60 316 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 HRKO00198 91 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 OGG1O15527 345 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 C1QBP02746 253 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 HIST1H1CP16403 213 aaKnown RBP20.95■□□□□ 0.94
VPS53-211ENST00000571805 BTG1P62324 171 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 CCDC85BQ15834 202 aaPredicted RBP20.95■□□□□ 0.94
VPS53-211ENST00000571805 TP53I3Q53FA7 332 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 KIRREL2Q6UWL6 708 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 ZMYND19Q96E35 227 aaPredicted RBP20.95■□□□□ 0.94
VPS53-211ENST00000571805 VSTM2LQ96N03 204 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 NKX2-4Q9H2Z4 354 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 NIPAL2Q9H841 368 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 CLEC1BQ9P126 229 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 DTX4Q9Y2E6 619 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 NPFFR2Q9Y5X5 522 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 SPTBN5Q9NRC6 3674 aaKnown RBP20.95■□□□□ 0.94
VPS53-211ENST00000571805 MAGEB4O15481 346 aaPredicted RBP20.95■□□□□ 0.94
VPS53-211ENST00000571805 FZD7O75084 574 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 RAB3BP20337 219 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 BTCP35070 178 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 SDR9C7Q8NEX9 313 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 OR4K13Q8NH42 304 aa20.95■□□□□ 0.94
VPS53-211ENST00000571805 GFM1Q96RP9 751 aaKnown RBP20.95■□□□□ 0.94
VPS53-211ENST00000571805 ST6GALNAC1Q9NSC7 600 aaPredicted RBP20.95■□□□□ 0.94
VPS53-211ENST00000571805 A0A1W2PRG6 482 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 NPIPB9F8W1W9 429 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 EEF1E1O43324 174 aaKnown RBP20.94■□□□□ 0.94
VPS53-211ENST00000571805 ST6GAL1P15907 406 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 TNK1Q13470 666 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 FGFBP1Q14512 234 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 ZNHIT3Q15649 155 aaPredicted RBP20.94■□□□□ 0.94
VPS53-211ENST00000571805 ZNF141Q15928 474 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 DEFB110Q30KQ9 67 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 ZNF542PQ5EBM4 170 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 PYHIN1Q6K0P9 492 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 ULK3Q6PHR2 472 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 FRMD1Q8N878 549 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 GAS2L1Q99501 681 aaPredicted RBP20.94■□□□□ 0.94
VPS53-211ENST00000571805 SLX1AQ9BQ83 275 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 RBCK1Q9BYM8 510 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 TTTY10Q9BZA0 68 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 ABCG5Q9H222 651 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 KLHL1Q9NR64 748 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 ING3Q9NXR8 418 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 TRAV1-2A0A0B4J238 106 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 KIR2DS5A0A0G2JLQ3 304 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 A0A0G2JNG1 304 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 KIR2DS3K7RE56 304 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 FOXS1O43638 330 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 RAB25P57735 213 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 MRPS21P82921 87 aaKnown RBP20.94■□□□□ 0.94
VPS53-211ENST00000571805 GAS6Q14393 721 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 KIR2DS5Q14953 304 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 CADM2Q8N3J6 435 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 OR5H6Q8NGV6 325 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 MRPL38Q96DV4 380 aaKnown RBP20.94■□□□□ 0.94
VPS53-211ENST00000571805 PELI1Q96FA3 418 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 TRAF4Q9BUZ4 470 aaPredicted RBP20.94■□□□□ 0.94
VPS53-211ENST00000571805 ZCCHC4Q9H5U6 513 aa20.94■□□□□ 0.94
VPS53-211ENST00000571805 OR5K3A6NET4 321 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 C10orf142B7Z368 130 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 NDUFB2O95178 105 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 HTR4Q13639 388 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 GGTLC2Q14390 218 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 SLC36A2Q495M3 483 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 SNAP47Q5SQN1 464 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 NPSR1Q6W5P4 371 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 LRRC17Q8N6Y2 441 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 FAM98AQ8NCA5 519 aaKnown RBP20.93■□□□□ 0.94
VPS53-211ENST00000571805 RCBTB1Q8NDN9 531 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 LRFN5Q96NI6 719 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 YIPF2Q9BWQ6 316 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 GON7Q9BXV9 100 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 GSDMCQ9BYG8 508 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 IER3IP1Q9Y5U9 82 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 MCIDASD6RGH6 385 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 GNB5O14775 395 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 OR2T7P0C7T2 308 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 DLX2Q07687 328 aaPredicted RBP20.93■□□□□ 0.94
VPS53-211ENST00000571805 CEP78Q5JTW2 689 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 ZNF550Q7Z398 422 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms