RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 C16orf78Q8WTQ4 265 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 NEU4Q8WWR8 484 aaPredicted RBP9.67□□□□□ -0.86
VPS53-207ENST00000570510 MTERF3Q96E29 417 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 CHMP6Q96FZ7 201 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 FCRL1Q96LA6 429 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 LRRC37BQ96QE4 947 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 OR5B2Q96R09 309 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 LMF2Q9BU23 707 aaKnown RBP9.67□□□□□ -0.86
VPS53-207ENST00000570510 C1orf109Q9NX04 203 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 HAO1Q9UJM8 370 aa9.67□□□□□ -0.86
VPS53-207ENST00000570510 MRPL33O75394 65 aaKnown RBP9.66□□□□□ -0.86
VPS53-207ENST00000570510 IGKV1D-16P01601 117 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 CRYAAP02489 173 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 SERPINE1P05121 402 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 NGFRP08138 427 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 ANXA4P09525 319 aaPredicted RBP9.66□□□□□ -0.86
VPS53-207ENST00000570510 OR4A8P0C604 315 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 PGCP20142 388 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 DDCP20711 480 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 MAPK1P28482 360 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 GPC1P35052 558 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 ASMTP46597 345 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 PPOXP50336 477 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 CSNK2A1P68400 391 aaPredicted RBP9.66□□□□□ -0.86
VPS53-207ENST00000570510 C2orf80Q0P641 193 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 SELENBP1Q13228 472 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 MAD2L1Q13257 205 aaPredicted RBP9.66□□□□□ -0.86
VPS53-207ENST00000570510 KIAA0040Q15053 153 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 TRIP10Q15642 601 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 GABRA6Q16445 453 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 CEP85LQ5SZL2 805 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 RBMS3Q6XE24 437 aaKnown RBP9.66□□□□□ -0.86
VPS53-207ENST00000570510 NUDCD3Q8IVD9 361 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 ZNF786Q8N393 782 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 ZNF527Q8NB42 609 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 UBASH3BQ8TF42 649 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 ELP4Q96EB1 424 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 ZHX1-C8orf76Q96EF9 292 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 PPP3R2Q96LZ3 170 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 MUS81Q96NY9 551 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 NARFLQ9H6Q4 476 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 COQ10BQ9H8M1 238 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 DYNLRB1Q9NP97 96 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 CA10Q9NS85 328 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 ARGLU1Q9NWB6 273 aaPredicted RBP9.66□□□□□ -0.86
VPS53-207ENST00000570510 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.66□□□□□ -0.86
VPS53-207ENST00000570510 SPEF1Q9Y4P9 236 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 CCL27Q9Y4X3 112 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 PTGDR2Q9Y5Y4 395 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 V9GYY5 206 aaPredicted RBP9.66□□□□□ -0.86
VPS53-207ENST00000570510 NOTCH1P46531 2555 aa9.66□□□□□ -0.86
VPS53-207ENST00000570510 SH3PXD2BA1X283 911 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 MYO1GB0I1T2 1018 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 SULT2B1O00204 365 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 GPR171O14626 319 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 EFNA2O43921 213 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 LYPLA1O75608 230 aaPredicted RBP9.65□□□□□ -0.86
VPS53-207ENST00000570510 ALX3O95076 343 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 MSMBP08118 114 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 PRPS2P11908 318 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 CDH2P19022 906 aaPredicted RBP9.65□□□□□ -0.86
VPS53-207ENST00000570510 TSPAN8P19075 237 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 SERPINB4P48594 390 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 ARFIP2P53365 341 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 IL1RL1Q01638 556 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 BTKQ06187 659 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 UGT3A2Q3SY77 523 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 NOXRED1Q6NXP6 359 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 RPS27LQ71UM5 84 aaKnown RBP9.65□□□□□ -0.86
VPS53-207ENST00000570510 R3HCC1LQ7Z5L2 792 aaKnown RBP9.65□□□□□ -0.86
VPS53-207ENST00000570510 C17orf78Q8N4C9 275 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 TMCO5AQ8N6Q1 288 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 OR51F2Q8NH61 342 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 RFWD2Q8NHY2 731 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 EBPLQ9BY08 206 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 VIPAS39Q9H9C1 493 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 SERINC1Q9NRX5 453 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 ING1Q9UK53 422 aaPredicted RBP9.65□□□□□ -0.86
VPS53-207ENST00000570510 TIMM22Q9Y584 194 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 DNAJC15Q9Y5T4 150 aa9.65□□□□□ -0.86
VPS53-207ENST00000570510 HEATR1Q9H583 2144 aaKnown RBP9.64□□□□□ -0.87
VPS53-207ENST00000570510 PNPP00491 289 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 ATP6V1C1P21283 382 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 FPR2P25090 351 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 ZFP36P26651 326 aaKnown RBP9.64□□□□□ -0.87
VPS53-207ENST00000570510 LCN1P31025 176 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 P2RX1P51575 399 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 CCR4P51679 360 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 RAE1P78406 368 aaKnown RBP9.64□□□□□ -0.87
VPS53-207ENST00000570510 ZNF117Q03924 483 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 HSPB3Q12988 150 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 SPDYAQ5MJ70 313 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 FAM71E1Q6IPT2 247 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 C3orf33Q6P1S2 294 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 CASP12Q6UXS9 341 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 MTERF4Q7Z6M4 381 aaKnown RBP9.64□□□□□ -0.87
VPS53-207ENST00000570510 COX18Q8N8Q8 333 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 CDRT4Q8N9R6 151 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 FBXO30Q8TB52 745 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 JADE3Q92613 823 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms