RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 C2P06681 752 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 CHN1P15882 459 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 COL8A2P25067 703 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 MAGEA8P43361 318 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 KRT6CP48668 564 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 ZNF763Q0D2J5 394 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 DUSP5Q16690 384 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 TSPO2Q5TGU0 170 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 SAXO2Q658L1 398 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 LEG1Q6P5S2 330 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 FAM169BQ8N8A8 192 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 COX18Q8N8Q8 333 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 SLC16A11Q8NCK7 471 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 WFDC12Q8WWY7 111 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 APIPQ96GX9 242 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 ARL5BQ96KC2 179 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 ZNF416Q9BWM5 594 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 HOXD1Q9GZZ0 328 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 ZNF275Q9NSD4 429 aaPredicted RBP15.54■□□□□ 0.08
CLK3-227ENST00000570296 ZDHHC2Q9UIJ5 367 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 A0A1B0GUS0 222 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 TIMM23O14925 209 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 PIP5K1BO14986 540 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 PIN1P1O15428 100 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 PPIHO43447 177 aaKnown RBP15.53■□□□□ 0.08
CLK3-227ENST00000570296 PMS2P2O95744 297 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 HPXP02790 462 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 BAMBIQ13145 260 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 CBFBQ13951 182 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 TBRG1Q3YBR2 411 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 TECRLQ5HYJ1 363 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 CCNJQ5T5M9 372 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 C17orf107Q6ZR85 190 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 ST8SIA1Q92185 356 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 UBE2FQ969M7 185 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 RAB39BQ96DA2 213 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 GIMAP5Q96F15 307 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 MS4A4EQ96PG1 132 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 ACPTQ9BZG2 426 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 QRSL1Q9H0R6 528 aaKnown RBP15.53■□□□□ 0.08
CLK3-227ENST00000570296 MS4A5Q9H3V2 200 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 C7orf69Q9H7B7 122 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 SIRT5Q9NXA8 310 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 OPN4Q9UHM6 478 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 FLVCR1Q9Y5Y0 555 aa15.53■□□□□ 0.08
CLK3-227ENST00000570296 ARPC4-TTLL3A0A0A6YYG9 625 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 ESPNB1AK53 854 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 PPP6CO00743 305 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 SCAMP2O15127 329 aaKnown RBP15.52■□□□□ 0.08
CLK3-227ENST00000570296 SYNGR3O43761 229 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 EIF4E2O60573 245 aaKnown RBP15.52■□□□□ 0.08
CLK3-227ENST00000570296 RPS17P08708 135 aaKnown RBP15.52■□□□□ 0.08
CLK3-227ENST00000570296 ALOX5P09917 674 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 CDH2P19022 906 aaPredicted RBP15.52■□□□□ 0.08
CLK3-227ENST00000570296 EVX1P49640 407 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 PRKAG1P54619 331 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 UBE2NP61088 152 aaKnown RBP15.52■□□□□ 0.08
CLK3-227ENST00000570296 HSPB3Q12988 150 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 FAM71E1Q6IPT2 247 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 ZCCHC12Q6PEW1 402 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 LRIG3Q6UXM1 1119 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 ZNF551Q7Z340 670 aaPredicted RBP15.52■□□□□ 0.08
CLK3-227ENST00000570296 ABHD12BQ7Z5M8 362 aaPredicted RBP15.52■□□□□ 0.08
CLK3-227ENST00000570296 CCDC103Q8IW40 242 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 TMCO5AQ8N6Q1 288 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 CDC26Q8NHZ8 85 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 ZNF317Q96PQ6 595 aaPredicted RBP15.52■□□□□ 0.08
CLK3-227ENST00000570296 CITED1Q99966 193 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 BTBD2Q9BX70 525 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 OXSMQ9NWU1 459 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 REV1Q9UBZ9 1251 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 ZNF225Q9UK10 706 aa15.52■□□□□ 0.08
CLK3-227ENST00000570296 M0R233 179 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 ULK1O75385 1050 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 KNG1P01042 644 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 ATP6V1C1P21283 382 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 GPC1P35052 558 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 RNF144AP50876 292 aaPredicted RBP15.51■□□□□ 0.07
CLK3-227ENST00000570296 POU6F2P78424 691 aaPredicted RBP15.51■□□□□ 0.07
CLK3-227ENST00000570296 SRSF4Q08170 494 aaKnown RBP15.51■□□□□ 0.07
CLK3-227ENST00000570296 NDUFAF6Q330K2 333 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 FAM219BQ5XKK7 198 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 RHOUQ7L0Q8 258 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 POMGNT2Q8NAT1 580 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 RFWD2Q8NHY2 731 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 ZNF483Q8TF39 744 aaPredicted RBP15.51■□□□□ 0.07
CLK3-227ENST00000570296 YIPF5Q969M3 257 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 TMIGD2Q96BF3 282 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 RSPO3Q9BXY4 272 aaPredicted RBP15.51■□□□□ 0.07
CLK3-227ENST00000570296 IQCGQ9H095 443 aaKnown RBP15.51■□□□□ 0.07
CLK3-227ENST00000570296 SEC61A2Q9H9S3 476 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 TMEM45AQ9NWC5 275 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 JRKLQ9Y4A0 524 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 SPIN1Q9Y657 262 aaPredicted RBP15.51■□□□□ 0.07
CLK3-227ENST00000570296 ARHGAP32A7KAX9 2087 aa15.51■□□□□ 0.07
CLK3-227ENST00000570296 ZNF264O43296 627 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 DNAJA2O60884 412 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 SMIM24O75264 130 aa15.5■□□□□ 0.07
CLK3-227ENST00000570296 DEAF1O75398 565 aaPredicted RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms