RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SH3D21A4FU49 640 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 SMAD9O15198 467 aaKnown RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 THBS1P07996 1170 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 VIMP08670 466 aaKnown RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 ARAFP10398 606 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 TFPIP10646 304 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 PRG2P13727 222 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 POU2F1P14859 743 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 PPIBP23284 216 aaKnown RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 TACR3P29371 465 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 CCKARP32238 428 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 UGT2B10P36537 528 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 SLC1A3P43003 542 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 KCNJ5P48544 419 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 ARFIP2P53365 341 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 LARS2Q15031 903 aaKnown RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 RNPS1Q15287 305 aaKnown RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 ADRM1Q16186 407 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 EXOC3L2Q2M3D2 409 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 GCNT6Q5T4J0 391 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 RNF220Q5VTB9 566 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 PRAMEF8Q5VWM4 474 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 PRAMEF7Q5VXH5 474 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 C22orf34Q6ZV56 151 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 NUFIP2Q7Z417 695 aaKnown RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 DPP10Q8N608 796 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 NFKBIDQ8NI38 313 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 SLC25A43Q8WUT9 341 aaPredicted RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 DNAJA3Q96EY1 480 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 CPPED1Q9BRF8 314 aaPredicted RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 SPATA9Q9BWV2 254 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 POLDIP3Q9BY77 421 aaKnown RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 ADAM19Q9H013 955 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 CLEC4MQ9H2X3 399 aaPredicted RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 CCDC134Q9H6E4 229 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 C12orf49Q9H741 205 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 MED4Q9NPJ6 270 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 KLHL13Q9P2N7 655 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 LEF1Q9UJU2 399 aaPredicted RBP13.39□□□□□ -0.27
VPS39-210ENST00000568357 ZNF232Q9UNY5 417 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 TMED7Q9Y3B3 224 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 TMEM72A0PK05 275 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 C5orf58C9J3I9 102 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 C16orf97H3BN30 126 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 SULT2B1O00204 365 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 ANGPT2O15123 496 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 YES1P07947 543 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 TROVE2P10155 538 aaKnown RBP eCLIP13.38□□□□□ -0.27
VPS39-210ENST00000568357 HTR3AP46098 478 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 POLR2HP52434 150 aaKnown RBP13.38□□□□□ -0.27
VPS39-210ENST00000568357 CDK6Q00534 326 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 SELPLGQ14242 412 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 ZNF311Q5JNZ3 666 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 TMEM201Q5SNT2 666 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 ANKRD34AQ69YU3 496 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 SERPINA11Q86U17 422 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 ZNF440Q8IYI8 595 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 SLC43A2Q8N370 569 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 BBS10Q8TAM1 723 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 TSPEARQ8WU66 669 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 ZNF775Q96BV0 537 aaPredicted RBP13.38□□□□□ -0.27
VPS39-210ENST00000568357 KLHL4Q9C0H6 718 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 LIME1Q9H400 295 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 TMEM38AQ9H6F2 299 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 KLHL28Q9NXS3 571 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 NDRG3Q9UGV2 375 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 IFT52Q9Y366 437 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 TESMINQ9Y4I5 508 aa13.38□□□□□ -0.27
VPS39-210ENST00000568357 SPIN1Q9Y657 262 aaPredicted RBP13.38□□□□□ -0.27
VPS39-210ENST00000568357 NIPBLQ6KC79 2804 aaeCLIP13.38□□□□□ -0.27
VPS39-210ENST00000568357 ZC3H12DA2A288 527 aaKnown RBP13.37□□□□□ -0.27
VPS39-210ENST00000568357 EVPLLA8MZ36 301 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 FBP2O00757 339 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 FRS3O43559 492 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 CYTIPO60759 359 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 FESP07332 822 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 ETS2P15036 469 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 FKBP2P26885 142 aaKnown RBP13.37□□□□□ -0.27
VPS39-210ENST00000568357 MDH1P40925 334 aaKnown RBP13.37□□□□□ -0.27
VPS39-210ENST00000568357 CLK1P49759 484 aaKnown RBP13.37□□□□□ -0.27
VPS39-210ENST00000568357 CSNK2A1P68400 391 aaPredicted RBP13.37□□□□□ -0.27
VPS39-210ENST00000568357 HOXC5Q00444 222 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 ZSWIM7Q19AV6 140 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 REEP3Q6NUK4 255 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 ZNF550Q7Z398 422 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 DHDDSQ86SQ9 333 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 MTDHQ86UE4 582 aaKnown RBP13.37□□□□□ -0.27
VPS39-210ENST00000568357 COMTD1Q86VU5 262 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 CDC20BQ86Y33 519 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 CADM2Q8N3J6 435 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 ANKRD27Q96NW4 1050 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 CGREF1Q99674 301 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 PSD2Q9BQI7 771 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 BCO1Q9HAY6 547 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 GP6Q9HCN6 339 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 HDGFL3Q9Y3E1 203 aa13.37□□□□□ -0.27
VPS39-210ENST00000568357 ZNF814B7Z6K7 855 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 ZNF208O43345 1280 aa13.36□□□□□ -0.27
VPS39-210ENST00000568357 ATP8B1O43520 1251 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms