RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CLCA1A8K7I4 914 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 FAAHO00519 579 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 TPST1O60507 370 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 GMNNO75496 209 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 EPPINO95925 133 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 IL2RAP01589 272 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 TFPIP10646 304 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 CCNA2P20248 432 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 IL11P20809 199 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 CALB2P22676 271 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 PSMA4P25789 261 aaKnown RBP15.5■□□□□ 0.07
CLN3-217ENST00000565354 SLC7A1P30825 629 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 GSK3BP49841 420 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 POLR2HP52434 150 aaKnown RBP15.5■□□□□ 0.07
CLN3-217ENST00000565354 SUCLG1P53597 346 aaKnown RBP15.5■□□□□ 0.07
CLN3-217ENST00000565354 IST1P53990 364 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 SLC25A3Q00325 362 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 TFF3Q07654 80 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 DMTNQ08495 405 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 NSUN5P2Q63ZY6 315 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 WBP2NLQ6ICG8 309 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 ESPNLQ6ZVH7 1005 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 TRPM8Q7Z2W7 1104 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 TGIF2LYQ8IUE0 185 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 DMRTC2Q8IXT2 367 aaPredicted RBP15.5■□□□□ 0.07
CLN3-217ENST00000565354 PGAM4Q8N0Y7 254 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 ASB5Q8WWX0 329 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 FIG4Q92562 907 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 SLC35B4Q969S0 331 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 ZNF559Q9BR84 538 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 PRRG4Q9BZD6 226 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 CXXC4Q9H2H0 198 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 CALHM2Q9HA72 323 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 CTPS2Q9NRF8 586 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 PAQR5Q9NXK6 330 aaPredicted RBP15.5■□□□□ 0.07
CLN3-217ENST00000565354 VPS13CQ709C8 3753 aa15.5■□□□□ 0.07
CLN3-217ENST00000565354 CD8B2A6NJW9 211 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 H0YC42 278 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 TNFSF11O14788 317 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 ADAM11O75078 769 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 GLI4P10075 376 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 TACR3P29371 465 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 SLC1A3P43003 542 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 TPD52P55327 224 aaPredicted RBP15.49■□□□□ 0.07
CLN3-217ENST00000565354 CLDN15P56746 228 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 TMEM176BQ3YBM2 270 aaPredicted RBP15.49■□□□□ 0.07
CLN3-217ENST00000565354 GLIPR1L2Q4G1C9 344 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 HBMQ6B0K9 141 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 CCDC80Q76M96 950 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 GGNQ86UU5 652 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 RANBP3LQ86VV4 465 aaPredicted RBP15.49■□□□□ 0.07
CLN3-217ENST00000565354 MARVELD2Q8N4S9 558 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 OR2V1Q8NHB1 315 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 LILRB4Q8NHJ6 448 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 SLC25A43Q8WUT9 341 aaPredicted RBP15.49■□□□□ 0.07
CLN3-217ENST00000565354 NRGNQ92686 78 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 PROX1Q92786 737 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 FOXC2Q99958 501 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 TIGARQ9NQ88 270 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 SELENONQ9NZV5 590 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 KCNN3Q9UGI6 736 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 CHRNA9Q9UGM1 479 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 PRDM4Q9UKN5 801 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 CHST2Q9Y4C5 530 aa15.49■□□□□ 0.07
CLN3-217ENST00000565354 HEATR5AQ86XA9 2040 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 TMED7-TICAM2A0A0A6YYA0 188 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 NKX2-6A6NCS4 301 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 SLC22A20A6NK97 555 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 B2RBV5 119 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 ETV2O00321 342 aaPredicted RBP15.48■□□□□ 0.07
CLN3-217ENST00000565354 CXCR6O00574 342 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 GCM2O75603 506 aaPredicted RBP15.48■□□□□ 0.07
CLN3-217ENST00000565354 SYNGR4O95473 234 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 NTN1O95631 604 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 PRG2P13727 222 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 CXCR1P25024 350 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 CHRNB4P30926 498 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 ACAA2P42765 397 aaKnown RBP15.48■□□□□ 0.07
CLN3-217ENST00000565354 KCNJ5P48544 419 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 HOXC5Q00444 222 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 RIPPLY2Q5TAB7 128 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 DEFB107AQ8IZN7 70 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 OR52E4Q8NGH9 312 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 OR10D3Q8NH80 312 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 RNF217Q8TC41 542 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 FAM162AQ96A26 154 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 TAMM41Q96BW9 452 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 ZNF524Q96C55 264 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 OR5B2Q96R09 309 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 TM9SF2Q99805 663 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 TMEM27Q9HBJ8 222 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 KCNJ16Q9NPI9 418 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 TMEM181Q9P2C4 612 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 ABCD2Q9UBJ2 740 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 TESQ9UGI8 421 aaKnown RBP15.48■□□□□ 0.07
CLN3-217ENST00000565354 BAG5Q9UL15 447 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 MCTS1Q9ULC4 181 aaKnown RBP15.48■□□□□ 0.07
CLN3-217ENST00000565354 TMED7Q9Y3B3 224 aa15.48■□□□□ 0.07
CLN3-217ENST00000565354 A0A0J9YW62 118 aa15.47■□□□□ 0.07
CLN3-217ENST00000565354 FAM90A27PA6NNH2 459 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms