RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 DUSP26Q9BV47 211 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 EML4Q9HC35 981 aaKnown RBP14.42□□□□□ -0.1
CLN3-208ENST00000561505 EXOSC3Q9NQT5 275 aaKnown RBP14.42□□□□□ -0.1
CLN3-208ENST00000561505 POLE3Q9NRF9 147 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 ASB6Q9NWX5 421 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 DCTN4Q9UJW0 460 aa14.42□□□□□ -0.1
CLN3-208ENST00000561505 NOSIPQ9Y314 301 aaKnown RBP14.42□□□□□ -0.1
CLN3-208ENST00000561505 ANKRD28O15084 1053 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 KIAA0513O60268 411 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 RAD51DO75771 328 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 CSF3P09919 207 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 MATN1P21941 496 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 CLDN8P56748 225 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 MERTKQ12866 999 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 SWI5Q1ZZU3 235 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 MST1LQ2TV78 715 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 SPDYE7PQ495Y7 208 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 ATP6AP1LQ52LC2 224 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 CYB5R2Q6BCY4 276 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 SLC22A25Q6T423 547 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 C4orf33Q8N1A6 199 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 PIAS4Q8N2W9 510 aaPredicted RBP14.41□□□□□ -0.1
CLN3-208ENST00000561505 C17orf78Q8N4C9 275 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 ZNF614Q8N883 585 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 OR52N5Q8NH56 324 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 PIGXQ8TBF5 258 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 FAM168AQ92567 244 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 KCNK17Q96T54 332 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 CTPS2Q9NRF8 586 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 CHRNA9Q9UGM1 479 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 MKLN1Q9UL63 735 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 SLC35A3Q9Y2D2 325 aa14.41□□□□□ -0.1
CLN3-208ENST00000561505 SPIN1Q9Y657 262 aaPredicted RBP14.41□□□□□ -0.1
CLN3-208ENST00000561505 RNASET2O00584 256 aaKnown RBP14.4□□□□□ -0.1
CLN3-208ENST00000561505 BCAS1O75363 584 aaPredicted RBP14.4□□□□□ -0.1
CLN3-208ENST00000561505 APOBEC3AP31941 199 aaPredicted RBP14.4□□□□□ -0.1
CLN3-208ENST00000561505 FABP6P51161 128 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 ZNF83P51522 516 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 CCR4P51679 360 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 CASP9P55211 416 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 RPS26P62854 115 aaKnown RBP14.4□□□□□ -0.1
CLN3-208ENST00000561505 EMX2Q04743 252 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 GPR68Q15743 365 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 TYW3Q6IPR3 259 aaKnown RBP14.4□□□□□ -0.1
CLN3-208ENST00000561505 GRINAQ7Z429 371 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 TMCO5AQ8N6Q1 288 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 OR8J2Q8NGG1 315 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 OR5AK3PQ8NH89 298 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 OR2W6PQ8NHA6 318 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 APOPT1Q96IL0 206 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 ZIM3Q96PE6 472 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 BEX2Q9BXY8 128 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 SLC17A5Q9NRA2 495 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 ZDHHC2Q9UIJ5 367 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 PRDM4Q9UKN5 801 aa14.4□□□□□ -0.1
CLN3-208ENST00000561505 CIB4A0PJX0 185 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 MRPL33O75394 65 aaKnown RBP14.39□□□□□ -0.11
CLN3-208ENST00000561505 SLU7O95391 586 aaKnown RBP14.39□□□□□ -0.11
CLN3-208ENST00000561505 AGR2O95994 175 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 IGHV3-9P01782 118 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 UBTFL6P0CB48 400 aaPredicted RBP14.39□□□□□ -0.11
CLN3-208ENST00000561505 G6PDP11413 515 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 USF1P22415 310 aaPredicted RBP14.39□□□□□ -0.11
CLN3-208ENST00000561505 MAP2K6P52564 334 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 FUT5Q11128 374 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 EMBQ6PCB8 327 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 OLIG3Q7RTU3 272 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 CCDC103Q8IW40 242 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 DEPDC4Q8N2C3 294 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 FNDC5Q8NAU1 212 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 EPS8L3Q8TE67 593 aaKnown RBP14.39□□□□□ -0.11
CLN3-208ENST00000561505 ZG16BQ96DA0 208 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 ZHX1-C8orf76Q96EF9 292 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 C1orf50Q9BV19 199 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 EXD2Q9NVH0 621 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 FLVCR1Q9Y5Y0 555 aa14.39□□□□□ -0.11
CLN3-208ENST00000561505 NDUFS8O00217 210 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 FAAHO00519 579 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 ZNF208O43345 1280 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 LMX1BO60663 402 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 BMP4P12644 408 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 PHC1P78364 1004 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 LSM11P83369 360 aaKnown RBP eCLIP14.38□□□□□ -0.11
CLN3-208ENST00000561505 SLC25A3Q00325 362 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 CHRNB3Q05901 458 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 SLC17A1Q14916 467 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 FRRS1Q6ZNA5 592 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 CLECL1Q8IZS7 167 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 UBE2J2Q8N2K1 259 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 OR52E4Q8NGH9 312 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 TMEM45BQ96B21 275 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 MECRQ9BV79 373 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 PIF1Q9H611 641 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 FKRPQ9H9S5 495 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 SLC7A10Q9NS82 523 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 PARPBPQ9NWS1 579 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 TMEM181Q9P2C4 612 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 SLC17A7Q9P2U7 560 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 POU2F3Q9UKI9 436 aa14.38□□□□□ -0.11
CLN3-208ENST00000561505 AMDHD2Q9Y303 409 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms